TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.444
(1020 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 143 3e-037
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 143 3e-037
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 143 3e-037
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 143 3e-037
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 140 1e-036
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 139 3e-036
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 138 9e-036
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 73 6e-028
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 116 9e-027
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 90 5e-024
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 90 5e-024
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 90 5e-024
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 90 5e-024
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 90 5e-024
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 90 5e-024
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 90 5e-024
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 90 5e-024
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 88 2e-023
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 84 8e-023
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 82 1e-021
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 81 2e-021
>gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J01
3-PRIME, mRNA sequence
Length = 641
Score = 143 bits (306), Expect(2) = 3e-037
Identities = 54/70 (77%), Positives = 67/70 (95%)
Frame = +3 / -1
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 482 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 303
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 302 VPLALQLLVN 273
Score = 113 bits (242), Expect(2) = 1e-028
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -2 / +3
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 264 AAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEKVQ 443
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 444 AHAQLQ 461
Score = 110 bits (235), Expect = 1e-023
Identities = 51/78 (65%), Positives = 55/78 (70%)
Frame = -3 / +1
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 253 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 432
Query: 469 RMSTHAPSFSASMGHLSE 416
R S H PSFS S+GH+SE
Sbjct: 433 RRSRHTPSFSVSIGHVSE 486
Score = 33.1 bits (66), Expect(2) = 1e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 456 TRRASARRWGTCPRTAWA 403
TR ASA R GTC RTAWA
Sbjct: 446 TRPASACRSGTCRRTAWA 499
Score = 32.7 bits (65), Expect(2) = 3e-037
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 272 DCGCAVPPGYTCA*S 228
>gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 5', mRNA sequence
Length = 521
Score = 143 bits (306), Expect(2) = 3e-037
Identities = 54/70 (77%), Positives = 67/70 (95%)
Frame = +3 / +3
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 30 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 209
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 210 VPLALQLLVN 239
Score = 113 bits (242), Expect(2) = 1e-028
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -2 / -1
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 248 AAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEQVQ 69
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 68 AHAQLQ 51
Score = 107 bits (229), Expect = 8e-023
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = -3 / -2
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 259 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 80
Query: 469 RMSTHAPSFSASMGHLSE 416
S H PSFS S+GH+SE
Sbjct: 79 SRSRHTPSFSVSIGHVSE 26
Score = 33.1 bits (66), Expect(2) = 1e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -3
Query: 456 TRRASARRWGTCPRTAWA 403
TR ASA R GTC RTAWA
Sbjct: 66 TRPASACRSGTCRRTAWA 13
Score = 32.7 bits (65), Expect(2) = 3e-037
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 240 DCGCAVPPGYTCA*S 284
>gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49O19
5-PRIME, mRNA sequence
Length = 514
Score = 143 bits (306), Expect(2) = 3e-037
Identities = 54/70 (77%), Positives = 67/70 (95%)
Frame = +3 / +2
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 185 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 364
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 365 VPLALQLLVN 394
Score = 113 bits (242), Expect(2) = 1e-028
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -2 / -1
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 403 AAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEQVQ 224
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 223 AHAQLQ 206
Score = 107 bits (229), Expect = 8e-023
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = -3 / -2
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 414 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 235
Query: 469 RMSTHAPSFSASMGHLSE 416
S H PSFS S+GH+SE
Sbjct: 234 SRSRHTPSFSVSIGHVSE 181
Score = 33.1 bits (66), Expect(2) = 1e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -3
Query: 456 TRRASARRWGTCPRTAWA 403
TR ASA R GTC RTAWA
Sbjct: 221 TRPASACRSGTCRRTAWA 168
Score = 32.7 bits (65), Expect(2) = 3e-037
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / +2
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 395 DCGCAVPPGYTCA*S 439
>gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 3', mRNA sequence
Length = 473
Score = 143 bits (306), Expect(2) = 3e-037
Identities = 54/70 (77%), Positives = 67/70 (95%)
Frame = +3 / -3
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 444 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 265
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 264 VPLALQLLVN 235
Score = 113 bits (242), Expect(2) = 1e-028
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -2 / +1
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 226 AAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEQVQ 405
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 406 AHAQLQ 423
Score = 107 bits (229), Expect = 8e-023
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = -3 / +2
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 215 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 394
Query: 469 RMSTHAPSFSASMGHLSE 416
S H PSFS S+GH+SE
Sbjct: 395 SRSRHTPSFSVSIGHVSE 448
Score = 33.1 bits (66), Expect(2) = 1e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 456 TRRASARRWGTCPRTAWA 403
TR ASA R GTC RTAWA
Sbjct: 408 TRPASACRSGTCRRTAWA 461
Score = 32.7 bits (65), Expect(2) = 3e-037
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 234 DCGCAVPPGYTCA*S 190
>gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B10
3-PRIME, mRNA sequence
Length = 538
Score = 140 bits (301), Expect(2) = 1e-036
Identities = 53/68 (77%), Positives = 66/68 (97%)
Frame = +3 / -2
Query: 426 CPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVP 605
CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++YVP
Sbjct: 534 CPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALYVP 355
Query: 606 IALEVLVN 629
+AL++LVN
Sbjct: 354 LALQLLVN 331
Score = 112 bits (239), Expect = 3e-024
Identities = 47/66 (71%), Positives = 53/66 (80%)
Frame = -2 / +1
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 322 AAVVDEQLEGEGHVKGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEQVQ 501
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 502 AHAQLQ 519
Score = 103 bits (220), Expect = 1e-021
Identities = 48/76 (63%), Positives = 52/76 (68%)
Frame = -3 / +2
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 311 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 490
Query: 469 RMSTHAPSFSASMGHL 422
S H PSFS S+GH+
Sbjct: 491 SRSRHTPSFSVSIGHV 538
Score = 32.7 bits (65), Expect(2) = 1e-036
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / -2
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 330 DCGCAVPPGYTCA*S 286
>gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.C09, mRNA sequence
Length = 1035
Score = 139 bits (299), Expect(2) = 3e-036
Identities = 53/70 (75%), Positives = 66/70 (94%)
Frame = +3 / +3
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CP D LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 138 DTCPRDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 317
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 318 VPLALQLLVN 347
Score = 113 bits (242), Expect = 1e-024
Identities = 47/66 (71%), Positives = 54/66 (81%)
Frame = -2 / -2
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ARR GEPGDALH+ AALD GVADV LV E V
Sbjct: 356 AAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALHQGAALDAGVADVELVAEQVQ 177
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 176 AHAQLQ 159
Score = 105 bits (225), Expect = 3e-022
Identities = 49/77 (63%), Positives = 53/77 (68%)
Frame = -3 / -3
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV RHAAA SPAMP T GQHLTLASPM +S P
Sbjct: 367 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRHAAAVSPAMPCTRGQHLTLASPMWSSLP 188
Query: 469 RMSTHAPSFSASMGHLS 419
S H PSFS S+GH+S
Sbjct: 187 SRSRHTPSFSVSLGHVS 137
Score = 32.7 bits (65), Expect(2) = 3e-036
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 348 DCGCAVPPGYTCA*S 392
>gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. vulgare cDNA clone HI08P12
3-PRIME, mRNA sequence
Length = 456
Score = 138 bits (295), Expect(2) = 9e-036
Identities = 53/70 (75%), Positives = 66/70 (94%)
Frame = +3 / -1
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+LGNE+HIGDA+VKCCPLV+GIAGL+AAA LCTAIKAKVL++++Y
Sbjct: 429 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAAYLCTAIKAKVLNLALY 250
Query: 600 VPIALEVLVN 629
VP+AL++LVN
Sbjct: 249 VPLALQLLVN 220
Score = 111 bits (238), Expect(2) = 4e-028
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2 / +1
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRRGEPGDALHERAALDVGVADVHLVPENVH 459
AA VDE L+ +GHV+G V+HLGLDGGA+ RR GEPGDALH+ AALD GVADV LV E V
Sbjct: 211 AAVVDEQLEGEGHVEGEVEHLGLDGGAEVRRGGEPGDALHQGAALDAGVADVELVAEQVQ 390
Query: 458 ARAELQ 441
A A+LQ
Sbjct: 391 AHAQLQ 408
Score = 105 bits (223), Expect = 6e-022
Identities = 49/78 (62%), Positives = 54/78 (69%)
Frame = -3 / +2
Query: 649 GGTSQPQLTSTSSAMGT*TEMSSTLALMAVHRHAAAESPAMPFTSGQHLTLASPMCTSFP 470
G LTS+ A GT* STLALMAV R+AAA SPAMP T GQHLTLASPM +S P
Sbjct: 200 GTAQPQSLTSSWRARGT*RARLSTLALMAVQRYAAAVSPAMPCTRGQHLTLASPMWSSLP 379
Query: 469 RMSTHAPSFSASMGHLSE 416
S H PSFS S+GH+SE
Sbjct: 380 SRSRHTPSFSVSIGHVSE 433
Score = 33.1 bits (66), Expect(2) = 4e-028
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 456 TRRASARRWGTCPRTAWA 403
TR ASA R GTC RTAWA
Sbjct: 393 TRPASACRSGTCRRTAWA 446
Score = 32.7 bits (65), Expect(2) = 9e-036
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 627 NCGCEVPPGYKCT*T 671
+CGC VPPGY C *+
Sbjct: 219 DCGCAVPPGYTCA*S 175
>gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B195 5-PRIME, mRNA sequence
Length = 535
Score = 73.0 bits (153), Expect(3) = 6e-028
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +3 / +1
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCP 515
D CPID LKLG C+D+LGNE+HIGDA+VKCCP
Sbjct: 181 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCP 276
Score = 60.2 bits (125), Expect(3) = 3e-022
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = -3 / -3
Query: 526 PFTSGQHLTLASPMCTSFPRMSTHAPSFSASMGHLSE 416
P GQHLTLASPM +S P S H PSFS S+GH+SE
Sbjct: 287 PAPGGQHLTLASPMWSSLPSRSRHTPSFSVSIGHVSE 177
Score = 54.2 bits (112), Expect(3) = 3e-022
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 638 AAAVDEHLQRDGHVDGNVQHLGLDGGAQARRR 543
AA VDE L+ +GHV+G V+HLGLDGGA+A R
Sbjct: 401 AAVVDEQLEGEGHVEGEVEHLGLDGGAEAPPR 306
Score = 53.3 bits (110), Expect(3) = 6e-028
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +3 / +3
Query: 513 PLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVN 629
P + G CLCTAIKAKVL++++YVP+AL++LVN
Sbjct: 276 PWCRASPGSPPRRCLCTAIKAKVLNLALYVPLALQLLVN 392
Score = 35.9 bits (72), Expect(3) = 6e-028
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 627 NCGCEVPPGYKCT*TTP 677
+CGC VPPGY C *+ P
Sbjct: 393 DCGCAVPPGYTCA*SXP 443
Score = 28.6 bits (56), Expect(3) = 3e-022
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 551 RRRGEPGDALHE 516
RR GEPGDALH+
Sbjct: 313 RRGGEPGDALHQ 278
>gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N23f, mRNA sequence
Length = 739
Score = 116 bits (249), Expect(2) = 9e-027
Identities = 45/70 (64%), Positives = 58/70 (82%)
Frame = +3 / +2
Query: 420 DKCPIDALKLGACVDILGNEVHIGDANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 599
D CPID LKLG C+D+L N++HIGD +VKC PLV+GIAGL+AAACLCT I AK L++ +Y
Sbjct: 8 DTCPIDTLKLGVCLDLLSNKLHIGDTSVKCWPLVQGIAGLTAAACLCTDITAKALNLVLY 187
Query: 600 VPIALEVLVN 629
VP+AL ++ N
Sbjct: 188 VPVALYLVDN 217
Score = 23.5 bits (45), Expect(2) = 9e-027
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 627 NCGCEVPPGYKCT*T 671
+CG VP GY C *+
Sbjct: 218 DCGGAVPTGYTCA*S 262
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +2
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 389 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 559
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 314 CPIDALKLNACVDVLSGLVHL 376
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +2
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 167 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 337
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 92 CPIDALKLNACVDVLSGLVHL 154
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +2
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 224 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 394
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 149 CPIDALKLNACVDVLSGLVHL 211
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / -1
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 438 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 268
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / -1
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 513 CPIDALKLNACVDVLSGLVHL 451
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +2
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 233 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 403
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 158 CPIDALKLNACVDVLSGLVHL 220
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +1
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 307 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 477
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 232 CPIDALKLNACVDVLSGLVHL 294
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +1
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 358 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 528
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 283 CPIDALKLNACVDVLSGLVHL 345
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 90.0 bits (190), Expect(2) = 5e-024
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +3 / +2
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 167 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 337
Score = 41.4 bits (84), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 92 CPIDALKLNACVDVLSGLVHL 154
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 88.1 bits (186), Expect(2) = 2e-023
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = +3 / +3
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYKC 662
+A KCCPLV+G A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 192 EARSKCCPLVQGAADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 362
Score = 41.4 bits (84), Expect(2) = 2e-023
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 117 CPIDALKLNACVDVLSGLVHL 179
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 84.5 bits (178), Expect(2) = 8e-023
Identities = 29/56 (51%), Positives = 44/56 (78%)
Frame = +3 / +3
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVPPGYK 659
+A KCCPLV+G+A L AA CLCT ++A+VL+I++Y+P+AL +L+ CG P G++
Sbjct: 171 EARSKCCPLVQGVADLDAALCLCTTMRARVLNINIYLPVALRLLITCGKHPPNGFQ 338
Score = 42.8 bits (87), Expect(2) = 8e-023
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 96 CPIDALKLNACVDVLSGRVHL 158
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 82.2 bits (173), Expect(2) = 1e-021
Identities = 29/52 (55%), Positives = 41/52 (78%)
Frame = +3 / +3
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCEVP 647
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P
Sbjct: 399 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPP 554
Score = 41.4 bits (84), Expect(2) = 1e-021
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 324 CPIDALKLNACVDVLSGLVHL 386
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 81.3 bits (171), Expect(2) = 2e-021
Identities = 28/48 (58%), Positives = 40/48 (83%)
Frame = +3 / +3
Query: 492 DANVKCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCG 635
+A KCCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG
Sbjct: 504 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCG 647
Score = 41.4 bits (84), Expect(2) = 2e-021
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 426 CPIDALKLGACVDILGNEVHI 488
CPIDALKL ACVD+L VH+
Sbjct: 429 CPIDALKLNACVDVLSGLVHL 491
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 381,649,552
Number of Sequences: 312970
Number of extensions: 6062820
Number of successful extensions: 66231
Number of sequences better than 1.0e-020: 25
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12083773093
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)