TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.203
(959 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 140 7e-037
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 140 7e-037
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 140 7e-037
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 140 7e-037
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 138 3e-036
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 137 6e-036
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 135 2e-035
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 70 1e-026
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 114 2e-026
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 87 3e-023
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 87 3e-023
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 87 3e-023
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 87 3e-023
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 87 3e-023
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 87 3e-023
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 87 3e-023
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 87 3e-023
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 85 1e-022
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 82 5e-022
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 79 6e-021
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 79 6e-021
>gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. vulgare cDNA clone HI06J01
3-PRIME, mRNA sequence
Length = 641
Score = 140 bits (300), Expect(2) = 7e-037
Identities = 52/70 (74%), Positives = 67/70 (95%)
Frame = -2 / -1
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 482 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 303
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 302 VPLALQLLVN 273
Score = 123 bits (264), Expect = 1e-027
Identities = 56/93 (60%), Positives = 64/93 (68%)
Frame = +2 / +3
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 204 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALH 383
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RVD A V
Sbjct: 384 QGAALDAGVADVELVAEKVQAHAQLQRVDRARV 482
Score = 34.1 bits (68), Expect(2) = 7e-037
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 272 DCGCAVPPGYTC 237
>gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 5', mRNA sequence
Length = 521
Score = 140 bits (300), Expect(2) = 7e-037
Identities = 52/70 (74%), Positives = 67/70 (95%)
Frame = -2 / +3
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 30 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 209
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 210 VPLALQLLVN 239
Score = 123 bits (264), Expect = 1e-027
Identities = 56/93 (60%), Positives = 64/93 (68%)
Frame = +2 / -1
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 308 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALH 129
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RVD A V
Sbjct: 128 QGAALDAGVADVELVAEQVQAHAQLQRVDRARV 30
Score = 34.1 bits (68), Expect(2) = 7e-037
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 240 DCGCAVPPGYTC 275
>gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49O19
5-PRIME, mRNA sequence
Length = 514
Score = 140 bits (300), Expect(2) = 7e-037
Identities = 52/70 (74%), Positives = 67/70 (95%)
Frame = -2 / +2
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 185 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 364
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 365 VPLALQLLVN 394
Score = 123 bits (264), Expect = 1e-027
Identities = 56/93 (60%), Positives = 64/93 (68%)
Frame = +2 / -1
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 463 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALH 284
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RVD A V
Sbjct: 283 QGAALDAGVADVELVAEQVQAHAQLQRVDRARV 185
Score = 34.1 bits (68), Expect(2) = 7e-037
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / +2
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 395 DCGCAVPPGYTC 430
>gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak19j05 3', mRNA sequence
Length = 473
Score = 140 bits (300), Expect(2) = 7e-037
Identities = 52/70 (74%), Positives = 67/70 (95%)
Frame = -2 / -3
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 444 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 265
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 264 VPLALQLLVN 235
Score = 123 bits (264), Expect = 1e-027
Identities = 56/93 (60%), Positives = 64/93 (68%)
Frame = +2 / +1
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 166 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALH 345
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RVD A V
Sbjct: 346 QGAALDAGVADVELVAEQVQAHAQLQRVDRARV 444
Score = 34.1 bits (68), Expect(2) = 7e-037
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 234 DCGCAVPPGYTC 199
>gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. vulgare cDNA clone HI11B10
3-PRIME, mRNA sequence
Length = 538
Score = 138 bits (295), Expect(2) = 3e-036
Identities = 51/68 (75%), Positives = 66/68 (97%)
Frame = -2 / -2
Query: 547 CPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVP 368
CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++YVP
Sbjct: 534 CPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALYVP 355
Query: 367 IALEVLVN 344
+AL++LVN
Sbjct: 354 LALQLLVN 331
Score = 121 bits (259), Expect = 6e-027
Identities = 55/91 (60%), Positives = 62/91 (68%)
Frame = +2 / +1
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 262 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVKGEVEHLGLDGGAEARRGGEPGDALH 441
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGA 547
+ AALD GVADV LV E V A A+L+RVD A
Sbjct: 442 QGAALDAGVADVELVAEQVQAHAQLQRVDRA 534
Score = 34.1 bits (68), Expect(2) = 3e-036
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 330 DCGCAVPPGYTC 295
>gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.C09, mRNA sequence
Length = 1035
Score = 137 bits (293), Expect(2) = 6e-036
Identities = 51/70 (72%), Positives = 66/70 (94%)
Frame = -2 / +3
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CP D LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAACLCTAIKAKVL++++Y
Sbjct: 138 DTCPRDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAACLCTAIKAKVLNLALY 317
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 318 VPLALQLLVN 347
Score = 120 bits (257), Expect = 1e-026
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = +2 / -2
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ARR GEPGDALH
Sbjct: 416 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEARRGGEPGDALH 237
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RV A V
Sbjct: 236 QGAALDAGVADVELVAEQVQAHAQLQRVPRARV 138
Score = 34.1 bits (68), Expect(2) = 6e-036
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 348 DCGCAVPPGYTC 383
>gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. vulgare cDNA clone HI08P12
3-PRIME, mRNA sequence
Length = 456
Score = 135 bits (289), Expect(2) = 2e-035
Identities = 51/70 (72%), Positives = 66/70 (94%)
Frame = -2 / -1
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+LGNE+H+GDA+V+CCPLV+GIAGL+AAA LCTAIKAKVL++++Y
Sbjct: 429 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCPLVQGIAGLTAAAYLCTAIKAKVLNLALY 250
Query: 373 VPIALEVLVN 344
VP+AL++LVN
Sbjct: 249 VPLALQLLVN 220
Score = 122 bits (260), Expect = 4e-027
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = +2 / +1
Query: 275 GNGNGMGWNRSSAFVAWRDGAAAVDEHLERDGHVDGDVEHLGLDGGAKARRRGEPGDALH 454
G NG + AA VDE LE +GHV+G+VEHLGLDGGA+ RR GEPGDALH
Sbjct: 151 GTWNGRTDGSGAGVSRRHGAAAVVDEQLEGEGHVEGEVEHLGLDGGAEVRRGGEPGDALH 330
Query: 455 ERAALDVGVADVHLVPENVHAGAELERVDGALV 553
+ AALD GVADV LV E V A A+L+RVD A V
Sbjct: 331 QGAALDAGVADVELVAEQVQAHAQLQRVDRARV 429
Score = 34.1 bits (68), Expect(2) = 2e-035
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / -1
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 219 DCGCAVPPGYTC 184
>gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B195 5-PRIME, mRNA sequence
Length = 535
Score = 70.3 bits (147), Expect(3) = 1e-026
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = -2 / +1
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCP 458
D CPID LKLG C+D+LGNE+H+GDA+V+CCP
Sbjct: 181 DTCPIDTLKLGVCLDLLGNELHIGDASVKCCP 276
Score = 57.4 bits (119), Expect(4) = 6e-022
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2 / -3
Query: 335 AAAVDEHLERDGHVDGDVEHLGLDGGAKARRR 430
AA VDE LE +GHV+G+VEHLGLDGGA+A R
Sbjct: 401 AAVVDEQLEGEGHVEGEVEHLGLDGGAEAPPR 306
Score = 53.3 bits (110), Expect(3) = 1e-026
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = -2 / +3
Query: 460 PLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVN 344
P + G CLCTAIKAKVL++++YVP+AL++LVN
Sbjct: 276 PWCRASPGSPPRRCLCTAIKAKVLNLALYVPLALQLLVN 392
Score = 48.3 bits (99), Expect(4) = 6e-022
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3 / -3
Query: 447 PFTSGQHWTLASPTCTSFPRTSTQAPSLSASMGHLSE 557
P GQH TLASP +S P S PS S S+GH+SE
Sbjct: 287 PAPGGQHLTLASPMWSSLPSRSRHTPSFSVSIGHVSE 177
Score = 34.1 bits (68), Expect(3) = 1e-026
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 346 NCGCAVPPGYKC 311
+CGCAVPPGY C
Sbjct: 393 DCGCAVPPGYTC 428
Score = 29.5 bits (58), Expect(4) = 6e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3 / -1
Query: 294 DGIVQVHL*PGGTAQPQLTSTS 359
DG Q + PGGTAQPQ ++S
Sbjct: 445 DGXDQAQVYPGGTAQPQSLTSS 380
Score = 23.5 bits (45), Expect(4) = 6e-022
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3 / -2
Query: 423 AAAESPAMPFTSG 461
AAA SPAMP T G
Sbjct: 312 AAAVSPAMPCTRG 274
>gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N23f, mRNA sequence
Length = 739
Score = 114 bits (243), Expect(2) = 2e-026
Identities = 43/70 (61%), Positives = 58/70 (82%)
Frame = -2 / +2
Query: 553 DKCPIDALKLGACVDVLGNEVHVGDANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVY 374
D CPID LKLG C+D+L N++H+GD +V+C PLV+GIAGL+AAACLCT I AK L++ +Y
Sbjct: 8 DTCPIDTLKLGVCLDLLSNKLHIGDTSVKCWPLVQGIAGLTAAACLCTDITAKALNLVLY 187
Query: 373 VPIALEVLVN 344
VP+AL ++ N
Sbjct: 188 VPVALYLVDN 217
Score = 24.9 bits (48), Expect(2) = 2e-026
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2 / +2
Query: 346 NCGCAVPPGYKC 311
+CG AVP GY C
Sbjct: 218 DCGGAVPTGYTC 253
>gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42K16
5-PRIME, mRNA sequence
Length = 640
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +2
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 389 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 559
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 314 CPIDALKLNACVDVLSGLVHL 376
>gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N09 5', mRNA sequence
Length = 606
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +2
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 167 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 337
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 92 CPIDALKLNACVDVLSGLVHL 154
>gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D113 5-PRIME, mRNA sequence
Length = 585
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +2
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 224 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 394
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 149 CPIDALKLNACVDVLSGLVHL 211
>gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. vulgare cDNA clone HA02A21
3-PRIME, mRNA sequence
Length = 570
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / -1
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 438 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 268
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / -1
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 513 CPIDALKLNACVDVLSGLVHL 451
>gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A02
5-PRIME, mRNA sequence
Length = 563
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +2
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 233 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 403
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 158 CPIDALKLNACVDVLSGLVHL 220
>gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K04
5-PRIME, mRNA sequence
Length = 557
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 307 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 477
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 232 CPIDALKLNACVDVLSGLVHL 294
>gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. vulgare cDNA clone HI04K24
5-PRIME, mRNA sequence
Length = 552
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +1
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 358 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 528
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 283 CPIDALKLNACVDVLSGLVHL 345
>gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. vulgare cDNA clone HF03L21
5-PRIME, mRNA sequence
Length = 495
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 30/57 (52%), Positives = 45/57 (78%)
Frame = -2 / +2
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 167 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 337
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 92 CPIDALKLNACVDVLSGLVHL 154
>gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_M19 5', mRNA sequence
Length = 548
Score = 85.4 bits (180), Expect(2) = 1e-022
Identities = 30/57 (52%), Positives = 44/57 (77%)
Frame = -2 / +3
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYKC 311
+A +CCPLV+G A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG P G++C
Sbjct: 192 EARSKCCPLVQGAADLDAALCLCTTIRARVLNINIYLPVALRLLITCGKHPPNGFQC 362
Score = 41.4 bits (84), Expect(2) = 1e-022
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 117 CPIDALKLNACVDVLSGLVHL 179
>gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E06 5', mRNA sequence
Length = 422
Score = 81.7 bits (172), Expect(2) = 5e-022
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = -2 / +3
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCGCAVPPGYK 314
+A +CCPLV+G+A L AA CLCT ++A+VL+I++Y+P+AL +L+ CG P G++
Sbjct: 171 EARSKCCPLVQGVADLDAALCLCTTMRARVLNINIYLPVALRLLITCGKHPPNGFQ 338
Score = 42.8 bits (87), Expect(2) = 5e-022
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 96 CPIDALKLNACVDVLSGRVHL 158
>gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08I01V 5',
mRNA sequence
Length = 657
Score = 79.4 bits (167), Expect(2) = 6e-021
Identities = 27/48 (56%), Positives = 40/48 (83%)
Frame = -2 / +3
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCG 338
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG
Sbjct: 504 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCG 647
Score = 41.4 bits (84), Expect(2) = 6e-021
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 429 CPIDALKLNACVDVLSGLVHL 491
>gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G24
5-PRIME, mRNA sequence
Length = 554
Score = 79.4 bits (167), Expect(2) = 6e-021
Identities = 27/48 (56%), Positives = 40/48 (83%)
Frame = -2 / +3
Query: 481 DANVQCCPLVKGIAGLSAAACLCTAIKAKVLDISVYVPIALEVLVNCG 338
+A +CCPLV+G+A L AA CLCT I+A+VL+I++Y+P+AL +L+ CG
Sbjct: 399 EARSKCCPLVQGVADLDAALCLCTTIRARVLNINIYLPVALRLLITCG 542
Score = 41.4 bits (84), Expect(2) = 6e-021
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 547 CPIDALKLGACVDVLGNEVHV 485
CPIDALKL ACVDVL VH+
Sbjct: 324 CPIDALKLNACVDVLSGLVHL 386
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 400,478,908
Number of Sequences: 312970
Number of extensions: 7379243
Number of successful extensions: 105851
Number of sequences better than 1.0e-020: 25
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11241698313
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)