TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.148
(977 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA,... 98 4e-045
gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA,... 84 3e-043
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 83 5e-041
gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. v... 74 8e-040
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 82 7e-039
gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA li... 86 2e-038
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 81 6e-038
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 82 4e-036
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 85 5e-034
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 85 7e-034
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 78 4e-033
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 82 2e-032
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 82 7e-032
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 82 7e-032
gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedl... 92 1e-031
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 82 3e-031
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 76 9e-031
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 85 1e-029
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 85 1e-029
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 82 1e-029
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 82 1e-028
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 82 1e-028
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 82 1e-028
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 82 2e-028
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 79 2e-028
gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA li... 99 4e-028
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 85 1e-027
gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. v... 85 2e-027
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 83 5e-027
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 83 5e-027
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 91 7e-027
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 91 7e-027
gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. v... 91 7e-027
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 82 1e-026
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 82 1e-026
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 82 1e-026
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 82 1e-026
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 82 1e-026
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 82 1e-026
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 82 1e-026
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 82 1e-026
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 91 2e-026
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 82 2e-026
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 80 3e-026
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 80 4e-026
gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. v... 85 5e-026
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 87 1e-025
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 73 1e-025
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 82 2e-025
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 82 2e-025
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 85 2e-025
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 85 4e-025
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 85 4e-025
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 85 4e-025
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 85 1e-024
gb|BJ474408.1|BJ474408 BJ474408 K. Sato unpublished cDNA li... 86 1e-024
gb|BJ473760.1|BJ473760 BJ473760 K. Sato unpublished cDNA li... 86 1e-024
gb|AV936469.1|AV936469 AV936469 K. Sato unpublished cDNA li... 86 1e-024
gb|CA018105.1|CA018105 HV07H15r HV Hordeum vulgare subsp. v... 85 2e-024
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 82 5e-024
gb|BF254222.2|BF254222 HVSMEf0003F20f Hordeum vulgare seedl... 61 5e-024
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 85 9e-024
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 83 9e-024
gb|BJ475687.1|BJ475687 BJ475687 K. Sato unpublished cDNA li... 86 1e-023
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 82 1e-023
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 82 1e-023
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 82 2e-023
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 79 2e-023
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 83 3e-023
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 80 3e-023
gb|CA023147.1|CA023147 HZ45F22r HZ Hordeum vulgare subsp. v... 68 4e-023
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 82 1e-022
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 81 1e-022
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 78 2e-022
gb|BJ467881.1|BJ467881 BJ467881 K. Sato unpublished cDNA li... 86 2e-022
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 85 2e-022
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 58 3e-022
gb|BQ472448.1|BQ472448 HB09J14T BC Hordeum vulgare subsp. v... 75 3e-022
gb|BQ472509.1|BQ472509 HB09F20T BC Hordeum vulgare subsp. v... 75 7e-022
gb|BU968461.1|BU968461 HB07J14r BC Hordeum vulgare subsp. v... 74 2e-021
gb|BU968389.1|BU968389 HB07F20r BC Hordeum vulgare subsp. v... 74 2e-021
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 72 3e-021
gb|BI958216.1|BI958216 HVSMEn0013O15f Hordeum vulgare rachi... 51 4e-021
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 84 6e-021
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 81 6e-021
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 82 6e-021
>gb|BM373123.2|BM373123 EBma04_SQ003_D03_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_D03 5', mRNA sequence
Length = 695
Score = 98.2 bits (208), Expect(3) = 4e-045
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = -1 / +3
Query: 935 VPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSY 756
+PY N+ D+ A +R ++ LGWF++P+V GDYP SMRS R RLP FT + A L GSY
Sbjct: 72 LPYSNSTADKAAAKRRVEFMLGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSY 251
Query: 755 DILGINYYTSRFS 717
D +G+NYYT+ ++
Sbjct: 252 DFVGLNYYTTYYA 290
Score = 64.8 bits (135), Expect(3) = 4e-045
Identities = 21/61 (34%), Positives = 41/61 (67%)
Frame = -1 / +3
Query: 485 DNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGI 306
++ L +++AL D R++Y +H+ + +I +++G+FTW+ +D FEW GY +R+G+
Sbjct: 513 NSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGL 692
Query: 305 I 303
I
Sbjct: 693 I 695
Score = 57.4 bits (119), Expect(3) = 4e-045
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -1 / +3
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
DG +GP ++++YP G+ +L++ K +Y NP +Y+ ENGI + + P+
Sbjct: 369 DGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 530
>gb|BM373002.2|BM373002 EBma04_SQ002_L05_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L05 5', mRNA sequence
Length = 616
Score = 84.0 bits (177), Expect(3) = 3e-043
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -1 / +1
Query: 875 LGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
LGWF++P+V GDYP SMRS R RLP FT + A L GSYD +G+NYYT+ ++
Sbjct: 13 LGWFMDPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTTYYA 171
Score = 72.5 bits (152), Expect(3) = 3e-043
Identities = 24/65 (36%), Positives = 44/65 (67%)
Frame = -1 / +1
Query: 485 DNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGI 306
++ L +++AL D R++Y +H+ + +I +++G+FTW+ +D FEW GY +R G+
Sbjct: 394 NSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRXGL 573
Query: 305 IYVDR 291
IY+DR
Sbjct: 574 IYIDR 588
Score = 57.4 bits (119), Expect(3) = 3e-043
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
DG +GP ++++YP G+ +L++ K +Y NP +Y+ ENGI + + P+
Sbjct: 250 DGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 411
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 83.1 bits (175), Expect(3) = 5e-041
Identities = 35/101 (34%), Positives = 56/101 (55%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G++G+ D N+ D+ A +R+ D ++GWF++P++ G YP M+ L ++RLP F
Sbjct: 122 GKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKF 301
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
T E M+ GS D +GIN YT+ K + +AD
Sbjct: 302 TPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 424
Score = 65.2 bits (136), Expect(3) = 5e-041
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY
Sbjct: 599 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGY 751
Score = 58.3 bits (121), Expect(3) = 5e-041
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 443 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 583
>gb|BU977487.1|BU977487 HA11I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA11I05
5-PRIME, mRNA sequence
Length = 655
Score = 74.4 bits (156), Expect(3) = 8e-040
Identities = 24/65 (36%), Positives = 45/65 (69%)
Frame = -1 / +1
Query: 485 DNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGI 306
++ L +++AL D R++Y +H+ + +I +++G+FTW+ +D FEW GY +R+G+
Sbjct: 376 NSSLPIKEALRDPARINYHYKHLLFLNLAIKQKVNIKGYFTWTFMDCFEWGDGYKDRFGL 555
Query: 305 IYVDR 291
IY+DR
Sbjct: 556 IYIDR 570
Score = 70.7 bits (148), Expect(3) = 8e-040
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -1 / +1
Query: 860 EPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
+P+V GDYP SMRS R RLP FT + A L GSYD +G+NYYT+ ++
Sbjct: 10 DPIVHGDYPASMRSWLRARLPAFTPAQTAALRGSYDFVGLNYYTTYYA 153
Score = 57.4 bits (119), Expect(3) = 8e-040
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
DG +GP ++++YP G+ +L++ K +Y NP +Y+ ENGI + + P+
Sbjct: 232 DGKPLGPQAYTEFLFVYPPGIHELMLYAKRRYNNPAVYVMENGIDEGNNSSLPI 393
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 81.7 bits (172), Expect(3) = 7e-039
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 390 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 569
Query: 296 D 294
D
Sbjct: 570 D 572
Score = 59.3 bits (123), Expect(3) = 7e-039
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = -1 / +3
Query: 866 FLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYS 687
F++P++ G YP M+ L ++RLP FT E M+ GS D +GIN YT+ K +
Sbjct: 18 FVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLMKGQKLLQQTP 197
Query: 686 PKLNAD 669
+AD
Sbjct: 198 TSYSAD 215
Score = 58.3 bits (121), Expect(3) = 7e-039
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 234 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 374
>gb|BJ463709.1|BJ463709 BJ463709 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30c23 5', mRNA sequence
Length = 688
Score = 85.8 bits (181), Expect(3) = 2e-038
Identities = 30/60 (50%), Positives = 45/60 (75%)
Frame = -1 / +2
Query: 473 SMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVD 294
SM+D + D R++YLQ +++ I ++ GA+VRG+F WSL+DNFEW G+T R+G+ YVD
Sbjct: 398 SMEDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 577
Score = 64.3 bits (134), Expect(3) = 2e-038
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1 / +2
Query: 869 WFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFSK 714
WFL+P+ GDYP MR + LP FT E+ +L D +G+N+YT+ ++K
Sbjct: 20 WFLDPIFFGDYPREMREMLSSNLPTFTSEEKRLLQSKADFIGVNHYTAIYAK 175
Score = 47.3 bits (97), Expect(3) = 2e-038
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
DG +IG P P Y P+G++ ++ + +Y N P+Y+TENG
Sbjct: 248 DGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVYVTENG 376
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 81.3 bits (171), Expect(3) = 6e-038
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 517 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSXKFGIVYV 696
Query: 296 D 294
D
Sbjct: 697 D 699
Score = 58.3 bits (121), Expect(3) = 6e-038
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 361 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 501
Score = 56.5 bits (117), Expect(3) = 6e-038
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -1 / +1
Query: 863 LEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSP 684
++P++ G YP M+ L ++RLP FT E M+ GS D +GIN YT+ K +
Sbjct: 148 VDPLINGHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLMKGQKLLQQTPT 327
Query: 683 KLNAD 669
+AD
Sbjct: 328 SYSAD 342
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 81.7 bits (172), Expect(3) = 4e-036
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 364 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 543
Query: 296 D 294
D
Sbjct: 544 D 546
Score = 58.3 bits (121), Expect(3) = 4e-036
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 208 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 348
Score = 50.1 bits (103), Expect(3) = 4e-036
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = -1 / +1
Query: 845 GDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
G YP M+ L ++RLP FT E M+ GS D +GIN YT+ K + +AD
Sbjct: 13 GHYPQIMQDLVKERLPKFTPAEAKMVKGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 189
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 85.4 bits (180), Expect(3) = 5e-034
Identities = 30/61 (49%), Positives = 48/61 (78%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ ++ L D R+++ + +++ +K++ID GA+V G+F WSLLDNFEW SGYT ++GI+YV
Sbjct: 391 LTREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYV 570
Query: 296 D 294
D
Sbjct: 571 D 573
Score = 50.6 bits (104), Expect(3) = 5e-034
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1 / +1
Query: 854 VVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRF 720
++ G YP +M+ + ++RLP FT + ++ GS D +GIN YT+ +
Sbjct: 31 LLNGQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATY 165
Score = 46.9 bits (96), Expect(3) = 5e-034
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1 / +1
Query: 647 IFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
IF +G IG + W+Y+ P G+ + ++ KY NP I I+ENG+
Sbjct: 232 IFQRNGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGM 375
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 85.4 bits (180), Expect(3) = 7e-034
Identities = 30/61 (49%), Positives = 48/61 (78%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ ++ L D R+++ + +++ +K++ID GA+V G+F WSLLDNFEW SGYT ++GI+YV
Sbjct: 296 LTREEFLHDASRVEFYKTYLAELKKAIDDGANVVGYFAWSLLDNFEWLSGYTSKFGIVYV 117
Query: 296 D 294
D
Sbjct: 116 D 114
Score = 50.1 bits (103), Expect(3) = 7e-034
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = -1 / -1
Query: 851 VRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRF 720
+ G YP +M+ + ++RLP FT + ++ GS D +GIN YT+ +
Sbjct: 653 LNGQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQYTATY 522
Score = 46.9 bits (96), Expect(3) = 7e-034
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1 / -1
Query: 647 IFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
IF +G IG + W+Y+ P G+ + ++ KY NP I I+ENG+
Sbjct: 455 IFQRNGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGM 312
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 77.6 bits (163), Expect(3) = 4e-033
Identities = 32/85 (37%), Positives = 50/85 (58%)
Frame = -1 / +1
Query: 923 NTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILG 744
N+ D+ A +R+ D ++GWF++P++ G YP M+ L ++RLP FT E M+ GS D +G
Sbjct: 1 NSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKFTPAEAKMVMGSADYIG 180
Query: 743 INYYTSRFSKHVDFSEDYSPKLNAD 669
IN YT+ K + +AD
Sbjct: 181 INQYTASLMKGQKLLQQTPTSYSAD 255
Score = 58.3 bits (121), Expect(3) = 4e-033
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 274 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 414
Score = 48.3 bits (99), Expect(3) = 4e-033
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = -1 / +2
Query: 368 FTWSLLDNFEWSSGYTERYGIIYVD 294
F SLLDNFEW +GY+ ++GI+YVD
Sbjct: 539 FAGSLLDNFEWMAGYSSKFGIVYVD 613
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 81.7 bits (172), Expect(3) = 2e-032
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 399 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 220
Query: 296 D 294
D
Sbjct: 219 D 217
Score = 58.3 bits (121), Expect(3) = 2e-032
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 555 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 415
Score = 37.7 bits (76), Expect(3) = 2e-032
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1 / -2
Query: 806 RLPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
RLP FT E M+ GS D +GIN YT+ K + +AD
Sbjct: 711 RLPKFTPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 574
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 81.7 bits (172), Expect(3) = 7e-032
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 403 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 224
Query: 296 D 294
D
Sbjct: 223 D 221
Score = 58.3 bits (121), Expect(3) = 7e-032
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 559 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
Score = 35.4 bits (71), Expect(3) = 7e-032
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1 / -2
Query: 803 LPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
LP FT E M+ GS D +GIN YT+ K + +AD
Sbjct: 713 LPKFTPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 579
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 81.7 bits (172), Expect(3) = 7e-032
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 382 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 203
Query: 296 D 294
D
Sbjct: 202 D 200
Score = 58.3 bits (121), Expect(3) = 7e-032
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 538 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
Score = 35.4 bits (71), Expect(3) = 7e-032
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1 / -1
Query: 803 LPFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
LP FT E M+ GS D +GIN YT+ K + +AD
Sbjct: 691 LPKFTPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 557
>gb|BG300683.1|BG300683 HVSMEb0017P19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017P19f, mRNA sequence
Length = 888
Score = 92.3 bits (195), Expect(3) = 1e-031
Identities = 36/66 (54%), Positives = 46/66 (69%)
Frame = -1 / +2
Query: 911 DEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYY 732
D A +RSLD LGWF+ PV G+YP +MR L +RLP FT + ML GSYD LG+NYY
Sbjct: 278 DRHAVKRSLDFMLGWFMHPVAFGEYPATMRRLVGRRLPEFTKEQSEMLKGSYDFLGLNYY 457
Query: 731 TSRFSK 714
TS +++
Sbjct: 458 TSNYAQ 475
Score = 58.3 bits (121), Expect(3) = 1e-031
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
+G IGPP +P YP GL++LL+ ++ YGN PIYITE G + + P+
Sbjct: 551 NGVPIGPPAFSPVFLNYPPGLRELLLYIRRIYGNRPIYITEXGTDEANNSTIPI 712
Score = 24.0 bits (46), Expect(3) = 1e-031
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2 / +3
Query: 466 KMRWRTTRG*ITSSATSQLLKNQ*TWGRTCAATSHGLCWTTSSGL 332
K R +TT ++ TS G T TSHG TTSS +
Sbjct: 714 KRRSKTTPASSSTLTTSSSCTRPSRKG*TWRVTSHGRFQTTSSSV 848
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 81.7 bits (172), Expect(3) = 3e-031
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 382 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 203
Query: 296 D 294
D
Sbjct: 202 D 200
Score = 58.3 bits (121), Expect(3) = 3e-031
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 538 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
Score = 33.6 bits (67), Expect(3) = 3e-031
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1 / -1
Query: 800 PFFTDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
P FT E M+ GS D +GIN YT+ K + +AD
Sbjct: 688 PKFTPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 557
>gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016D19f, mRNA sequence
Length = 887
Score = 76.2 bits (160), Expect(3) = 9e-031
Identities = 26/64 (40%), Positives = 45/64 (70%)
Frame = -1 / +2
Query: 911 DEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYY 732
D+ A +R+ D ++GWFL+P++ G YP +M+ + ++RLP FT + ++ GS D +GIN Y
Sbjct: 173 DKAAAQRARDFHVGWFLDPLLNGQYPKTMQDIVKERLPSFTPEQSKLVKGSVDYIGINQY 352
Query: 731 TSRF 720
T+ +
Sbjct: 353 TATY 364
Score = 48.7 bits (100), Expect(3) = 9e-031
Identities = 18/44 (40%), Positives = 32/44 (72%)
Frame = -1 / +2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDN 345
L+ + L D R+++ + +++ +K++ID GA+V G+F WSLLDN
Sbjct: 590 LTREGVLHDASRVEFYKTYLAELKKAIDDGANVVGYFGWSLLDN 721
Score = 46.9 bits (96), Expect(3) = 9e-031
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1 / +2
Query: 647 IFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
IF +G IG + W+Y+ P G+ + ++ KY NP I I+ENG+
Sbjct: 431 IFQRNGVPIGQKANSNWLYIVPTGMYGCVNYIREKYNNPTIIISENGM 574
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 84.9 bits (179), Expect(3) = 1e-029
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -1 / +3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+S+ D + D R+ Y + +I+ +K++ID GA V G+F WSLLDNFEW GYT R+GI+YV
Sbjct: 306 VSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYV 485
Query: 296 D 294
D
Sbjct: 486 D 488
Score = 50.1 bits (103), Expect(3) = 1e-029
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +3
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 126 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 290
Score = 33.1 bits (66), Expect(3) = 1e-029
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1 / +3
Query: 794 FTDNEQAMLAGSYDILGINYYTSRFSK 714
F+ +E M+ GS D +GIN YTS + K
Sbjct: 6 FSADESRMVKGSIDYVGINQYTSYYMK 86
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 84.9 bits (179), Expect(3) = 1e-029
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+S+ D + D R+ Y + +I+ +K++ID GA V G+F WSLLDNFEW GYT R+GI+YV
Sbjct: 316 VSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYV 495
Query: 296 D 294
D
Sbjct: 496 D 498
Score = 50.1 bits (103), Expect(3) = 1e-029
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +1
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 136 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 300
Score = 33.1 bits (66), Expect(3) = 1e-029
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1 / +1
Query: 794 FTDNEQAMLAGSYDILGINYYTSRFSK 714
F+ +E M+ GS D +GIN YTS + K
Sbjct: 16 FSADESRMVKGSIDYVGINQYTSYYMK 96
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 81.7 bits (172), Expect(3) = 1e-029
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 381 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 202
Query: 296 D 294
D
Sbjct: 201 D 199
Score = 58.3 bits (121), Expect(3) = 1e-029
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 537 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 397
Score = 27.6 bits (54), Expect(3) = 1e-029
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1 / -1
Query: 782 EQAMLAGSYDILGINYYTSRFSK 714
E M+ GS D +GIN YT+ K
Sbjct: 670 EAKMVMGSADYIGINQYTASLMK 602
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 81.7 bits (172), Expect(3) = 1e-028
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 413 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 234
Query: 296 D 294
D
Sbjct: 233 D 231
Score = 58.3 bits (121), Expect(3) = 1e-028
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 569 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 429
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1 / -3
Query: 764 GSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
GS D +GIN YT+ K + +AD
Sbjct: 683 GSADYIGINQYTASLMKGQKLLQQTPTSYSAD 588
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 81.7 bits (172), Expect(3) = 1e-028
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 408 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 229
Query: 296 D 294
D
Sbjct: 228 D 226
Score = 58.3 bits (121), Expect(3) = 1e-028
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 564 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1 / -1
Query: 764 GSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
GS D +GIN YT+ K + +AD
Sbjct: 678 GSADYIGINQYTASLMKGQKLLQQTPTSYSAD 583
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 81.7 bits (172), Expect(3) = 1e-028
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 377 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 198
Query: 296 D 294
D
Sbjct: 197 D 195
Score = 58.3 bits (121), Expect(3) = 1e-028
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 533 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 393
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1 / -1
Query: 764 GSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
GS D +GIN YT+ K + +AD
Sbjct: 647 GSADYIGINQYTASLMKGQKLLQQTPTSYSAD 552
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 81.7 bits (172), Expect(3) = 2e-028
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 394 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 215
Query: 296 D 294
D
Sbjct: 214 D 212
Score = 58.3 bits (121), Expect(3) = 2e-028
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 550 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 410
Score = 24.0 bits (46), Expect(3) = 2e-028
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1 / -3
Query: 764 GSYDILGINYYTSRFSK 714
GS D +GIN YT+ K
Sbjct: 665 GSADYIGINQYTASLMK 615
>gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_D19 5', mRNA sequence
Length = 480
Score = 78.5 bits (165), Expect(3) = 2e-028
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLL NFEW SGY+ ++GI+YV
Sbjct: 286 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLXNFEWMSGYSSKFGIVYV 465
Query: 296 D 294
D
Sbjct: 466 D 468
Score = 58.3 bits (121), Expect(3) = 2e-028
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 129 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 269
Score = 26.7 bits (52), Expect(3) = 2e-028
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1 / +3
Query: 773 MLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
M+ GS D +GIN YT+ K + +AD
Sbjct: 6 MVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 110
>gb|BJ462547.1|BJ462547 BJ462547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 5', mRNA sequence
Length = 657
Score = 98.7 bits (209), Expect(2) = 4e-028
Identities = 38/86 (44%), Positives = 56/86 (65%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P N D+ A +R+ D +LGWFL+P++ G YPF+M + ++RLP F
Sbjct: 52 GRIGILLDFVWYEPLSNNNADQAAAQRARDFHLGWFLDPIIHGRYPFTMLEIVKERLPRF 231
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 232 SADESTMIKGSIDYVGINQYTSFYMK 309
Score = 46.4 bits (95), Expect(2) = 4e-028
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -1 / +1
Query: 647 IFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPLSM 468
I+ +G IG + W+Y+ P G+ + +K +YGNP + + ENG+ +
Sbjct: 370 IYERNGVPIGAHANSYWLYIVPWGINKAVTYVKERYGNPTMILAENGMDQPGNVSITDGV 549
Query: 467 QDALEDYKRLDYL 429
QD + DY+
Sbjct: 550 QDTVRVRYYRDYI 588
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 84.9 bits (179), Expect(3) = 1e-027
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -1 / +2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+S+ D + D R+ Y + +I+ +K++ID GA V G+F WSLLDNFEW GYT R+GI+YV
Sbjct: 272 VSIADGVHDTVRIRYYRDYITELKKAIDNGARVAGYFAWSLLDNFEWRLGYTARFGIVYV 451
Query: 296 D 294
D
Sbjct: 452 D 454
Score = 50.1 bits (103), Expect(3) = 1e-027
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +2
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 92 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 256
Score = 26.3 bits (51), Expect(3) = 1e-027
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1 / +2
Query: 764 GSYDILGINYYTSRFSK 714
GS D +GIN YTS + K
Sbjct: 2 GSIDYVGINQYTSYYMK 52
>gb|BQ468777.1|BQ468777 HM02F02r HM Hordeum vulgare subsp. vulgare cDNA clone HM02F02
5-PRIME, mRNA sequence
Length = 553
Score = 85.4 bits (180), Expect(3) = 2e-027
Identities = 30/60 (50%), Positives = 45/60 (75%)
Frame = -1 / +1
Query: 473 SMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVD 294
SM+D + D R++YLQ +++ I ++ GA+VRG+F WSL+DNFEW G+T R+G+ YVD
Sbjct: 298 SMKDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 477
Score = 47.3 bits (97), Expect(3) = 2e-027
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
DG +IG P P Y P+G++ ++ + +Y N P+Y+TENG
Sbjct: 148 DGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVYVTENG 276
Score = 27.6 bits (54), Expect(3) = 2e-027
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1 / +1
Query: 785 NEQAMLAGSYDILGINYYTSRFSK 714
+E+ +L D +G+N+YT+ ++K
Sbjct: 4 HEERLLQSKADFIGVNHYTAIYAK 75
>gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_E07 5', mRNA sequence
Length = 715
Score = 83.1 bits (175), Expect(2) = 5e-027
Identities = 35/101 (34%), Positives = 56/101 (55%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G++G+ D N+ D+ A +R+ D ++GWF++P++ G YP M+ L ++RLP F
Sbjct: 250 GKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKF 429
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
T E M+ GS D +GIN YT+ K + +AD
Sbjct: 430 TPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 552
Score = 58.3 bits (121), Expect(2) = 5e-027
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 571 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 711
>gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 5', mRNA sequence
Length = 603
Score = 83.1 bits (175), Expect(2) = 5e-027
Identities = 35/101 (34%), Positives = 56/101 (55%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G++G+ D N+ D+ A +R+ D ++GWF++P++ G YP M+ L ++RLP F
Sbjct: 95 GKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDLVKERLPKF 274
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
T E M+ GS D +GIN YT+ K + +AD
Sbjct: 275 TPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 397
Score = 58.3 bits (121), Expect(2) = 5e-027
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 416 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 556
>gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012I04f, mRNA sequence
Length = 692
Score = 90.9 bits (192), Expect(2) = 7e-027
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P+ ++ D+ A +R+ D ++GWFL+P+ G YP SM + RLP F
Sbjct: 95 GRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGF 274
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 275 SADESRMVKGSIDYVGINQYTSYYMK 352
Score = 50.1 bits (103), Expect(2) = 7e-027
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +2
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 392 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 556
>gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
5-PRIME, mRNA sequence
Length = 678
Score = 90.9 bits (192), Expect(2) = 7e-027
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P+ ++ D+ A +R+ D ++GWFL+P+ G YP SM + RLP F
Sbjct: 133 GRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGF 312
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 313 SADESRMVKGSIDYVGINQYTSYYMK 390
Score = 50.1 bits (103), Expect(2) = 7e-027
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +1
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 430 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 594
>gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. vulgare cDNA clone HF09N16
5-PRIME, mRNA sequence
Length = 587
Score = 90.9 bits (192), Expect(2) = 7e-027
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P+ ++ D+ A +R+ D ++GWFL+P+ G YP SM + RLP F
Sbjct: 43 GRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGF 222
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 223 SADESRMVKGSIDYVGINQYTSYYMK 300
Score = 50.1 bits (103), Expect(2) = 7e-027
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1 / +1
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 340 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 504
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 403 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 224
Query: 296 D 294
D
Sbjct: 223 D 221
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 559 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 382 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 203
Query: 296 D 294
D
Sbjct: 202 D 200
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 538 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 402 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 223
Query: 296 D 294
D
Sbjct: 222 D 220
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 558 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 418
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 408 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 229
Query: 296 D 294
D
Sbjct: 228 D 226
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 564 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 424
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 400 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 221
Query: 296 D 294
D
Sbjct: 220 D 218
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 556 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 416
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 183 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 362
Query: 296 D 294
D
Sbjct: 363 D 365
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +3
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 27 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 167
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 403 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 224
Query: 296 D 294
D
Sbjct: 223 D 221
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / -1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 559 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 419
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 283 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 462
Query: 296 D 294
D
Sbjct: 463 D 465
Score = 58.3 bits (121), Expect(2) = 1e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 127 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 267
>gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010E10f, mRNA sequence
Length = 1046
Score = 90.9 bits (192), Expect(2) = 2e-026
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P+ ++ D+ A +R+ D ++GWFL+P+ G YP SM + RLP F
Sbjct: 121 GRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPSSMLKIVGNRLPGF 300
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 301 SADESRMVKGSIDYVGINQYTSYYMK 378
Score = 48.3 bits (99), Expect(2) = 2e-026
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -1 / +1
Query: 668 DAYATAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
D + ++ +G IGP + W+Y+ P G+ + +K ++GNP + ++ENG+
Sbjct: 418 DDWHVGFVYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERFGNPTMILSENGM 582
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 81.7 bits (172), Expect(2) = 2e-026
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / +2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 164 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 343
Query: 296 D 294
D
Sbjct: 344 D 346
Score = 57.4 bits (119), Expect(2) = 2e-026
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
+G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 17 NGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 148
>gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 5', mRNA sequence
Length = 604
Score = 80.3 bits (169), Expect(2) = 3e-026
Identities = 34/101 (33%), Positives = 55/101 (54%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G++G+ D N+ D+ A +R+ D ++GWF++P++ G YP M+ ++RLP F
Sbjct: 53 GKVGIVLDFNWYEALTNSTEDQAAAQRARDFHVGWFVDPLINGHYPQIMQDRVKERLPKF 232
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSKHVDFSEDYSPKLNAD 669
T E M+ GS D +GIN YT+ K + +AD
Sbjct: 233 TPAEAKMVMGSADYIGINQYTASLMKGQKLLQQTPTSYSAD 355
Score = 58.3 bits (121), Expect(2) = 3e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +2
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 374 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 514
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 79.9 bits (168), Expect(2) = 4e-026
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F W LLDNFEW SGY+ ++GI+YV
Sbjct: 277 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWXLLDNFEWMSGYSSKFGIVYV 456
Query: 296 D 294
D
Sbjct: 457 D 459
Score = 58.3 bits (121), Expect(2) = 4e-026
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
F +G IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 121 FERNGKPIGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 261
>gb|BU995809.1|BU995809 HM11G24r HM Hordeum vulgare subsp. vulgare cDNA clone HM11G24
5-PRIME, mRNA sequence
Length = 630
Score = 85.4 bits (180), Expect(3) = 5e-026
Identities = 30/60 (50%), Positives = 45/60 (75%)
Frame = -1 / +2
Query: 473 SMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVD 294
SM+D + D R++YLQ +++ I ++ GA+VRG+F WSL+DNFEW G+T R+G+ YVD
Sbjct: 293 SMKDLINDVGRVNYLQGYLTCISSAVRRGANVRGYFVWSLMDNFEWGFGFTVRFGLYYVD 472
Score = 47.3 bits (97), Expect(3) = 5e-026
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
DG +IG P P Y P+G++ ++ + +Y N P+Y+TENG
Sbjct: 143 DGVAIGRPTAFPGYYDVPEGMELIVKYVNQRYENAPVYVTENG 271
Score = 23.1 bits (44), Expect(3) = 5e-026
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = -1 / +2
Query: 755 DILGINYYTSRFSK 714
D +G+N+YT+ ++K
Sbjct: 29 DFIGVNHYTAIYAK 70
>gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. vulgare cDNA clone HF12E04
5-PRIME, mRNA sequence
Length = 570
Score = 87.2 bits (184), Expect(2) = 1e-025
Identities = 35/86 (40%), Positives = 53/86 (61%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
GRIG+ D + P+ ++ D+ A +R+ D ++GWFL+P+ G YP SM + LP F
Sbjct: 85 GRIGILLDFVWYEPHSDSNADQAAAQRARDFHIGWFLDPITNGRYPSSMLKIVGNWLPGF 264
Query: 791 TDNEQAMLAGSYDILGINYYTSRFSK 714
+ +E M+ GS D +GIN YTS + K
Sbjct: 265 SADESRMVKGSIDYVGINQYTSYYMK 342
Score = 49.6 bits (102), Expect(2) = 1e-025
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = -1 / +1
Query: 647 IFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
++ +G IGP + W+Y+ P G+ + +K +YGNP + ++ENG+
Sbjct: 403 VYERNGVPIGPRANSDWLYIVPWGMNKAVTYVKERYGNPTMILSENGM 546
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 73.0 bits (153), Expect(2) = 1e-025
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = -1 / +2
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAK 252
G DVRG+F WSLLDN+EW++GY+ R+G+ +VD +D +RY K S +
Sbjct: 347 GCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYNDKLKRYPKSSVQ 484
Score = 63.8 bits (133), Expect(2) = 1e-025
Identities = 21/46 (45%), Positives = 34/46 (73%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
+G +IG + W+Y+ P+G++ L+ +KN+Y +PPIYITENG+ D
Sbjct: 104 NGRAIGDRANSIWLYIVPRGMRSLMNYVKNRYNSPPIYITENGMDD 241
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 81.7 bits (172), Expect(2) = 2e-025
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 423 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 244
Query: 296 D 294
D
Sbjct: 243 D 241
Score = 54.7 bits (113), Expect(2) = 2e-025
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1 / -1
Query: 623 IGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 558 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 439
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 81.7 bits (172), Expect(2) = 2e-025
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
L+ L D R+ + + ++S +K++ID GA+V G+F WSLLDNFEW SGY+ ++GI+YV
Sbjct: 382 LTRDQYLRDTTRVRFYRSYLSELKKAIDGGANVLGYFAWSLLDNFEWMSGYSSKFGIVYV 203
Query: 296 D 294
D
Sbjct: 202 D 200
Score = 54.7 bits (113), Expect(2) = 2e-025
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1 / -1
Query: 623 IGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGI 504
IGP + W+Y+ P G+ + + KYGNPPI ITENG+
Sbjct: 517 IGPKANSNWLYIVPSGMYGCVHYLSQKYGNPPIVITENGM 398
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 414,515,336
Number of Sequences: 312970
Number of extensions: 6240761
Number of successful extensions: 39341
Number of sequences better than 1.0e-020: 123
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11494320747
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)