TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG369238.2|BG369238 HVSMEi0023E22f Hordeum vulgare 20 DA... 97 3e-040
gb|BG300442.1|BG300442 HVSMEb0017B08f Hordeum vulgare seedl... 97 3e-036
gb|BE194667.3|BE194667 HVSMEh0086G22f Hordeum vulgare 5-45 ... 97 3e-036
gb|BQ763249.1|BQ763249 EBro02_SQ007_O13_R root, 3 week, hyd... 97 3e-036
gb|BF625293.2|BF625293 HVSMEa0008E13f Hordeum vulgare seedl... 97 3e-036
gb|BI958424.1|BI958424 HVSMEn0014O14f Hordeum vulgare rachi... 97 3e-036
gb|BQ758832.1|BQ758832 EBma07_SQ002_P22_R maternal, 21 DPA,... 97 3e-036
gb|BI951343.1|BI951343 HVSMEl0025J13f Hordeum vulgare spike... 97 3e-036
gb|BM376582.2|BM376582 EBem05_SQ002_K04_R embryo, 14 DPA, n... 97 3e-036
gb|BQ758563.1|BQ758563 EBma07_SQ002_J05_R maternal, 21 DPA,... 97 3e-036
gb|BF622434.2|BF622434 HVSMEa0004E13f Hordeum vulgare seedl... 97 3e-036
gb|CK123576.1|CK123576 BES1824104i08 BES1824 Hordeum vulgar... 97 1e-035
gb|CB860150.1|CB860150 HI12N04w HI Hordeum vulgare subsp. v... 97 1e-035
gb|CA030068.1|CA030068 HX05P20r HX Hordeum vulgare subsp. v... 97 1e-035
gb|CA028189.1|CA028189 HZ61E05r HZ Hordeum vulgare subsp. v... 97 1e-035
gb|CA031010.1|CA031010 HX08M05r HX Hordeum vulgare subsp. v... 97 1e-035
gb|CA009677.1|CA009677 HU14M22r HU Hordeum vulgare subsp. v... 97 1e-035
gb|BQ460816.1|BQ460816 HA05N08r HA Hordeum vulgare subsp. v... 97 1e-035
gb|CA020686.1|CA020686 HZ37C22r HZ Hordeum vulgare subsp. v... 97 1e-035
gb|BQ470370.1|BQ470370 HX02L20r HX Hordeum vulgare subsp. v... 97 1e-035
gb|CA009469.1|CA009469 HU14D11r HU Hordeum vulgare subsp. v... 97 1e-035
gb|BU982124.1|BU982124 HA25J14r HA Hordeum vulgare subsp. v... 97 1e-035
gb|CA004420.1|CA004420 HS17I13r HS Hordeum vulgare subsp. v... 97 1e-035
gb|AV916174.1|AV916174 AV916174 K. Sato unpublished cDNA li... 97 1e-033
gb|BU977451.1|BU977451 HA11H06u HA Hordeum vulgare subsp. v... 85 7e-033
gb|AV921301.1|AV921301 AV921301 K. Sato unpublished cDNA li... 84 9e-033
gb|BU998985.1|BU998985 HI12N04r HI Hordeum vulgare subsp. v... 84 9e-033
gb|BG343313.2|BG343313 HVSMEg0005G06f Hordeum vulgare pre-a... 84 9e-033
gb|BJ469205.1|BJ469205 BJ469205 K. Sato unpublished cDNA li... 84 9e-033
gb|CB875130.1|CB875130 HX07F21w HX Hordeum vulgare subsp. v... 84 9e-033
gb|BJ471803.1|BJ471803 BJ471803 K. Sato unpublished cDNA li... 84 9e-033
gb|AV935849.1|AV935849 AV935849 K. Sato unpublished cDNA li... 84 9e-033
gb|AV935089.1|AV935089 AV935089 K. Sato unpublished cDNA li... 84 9e-033
gb|BJ475147.1|BJ475147 BJ475147 K. Sato unpublished cDNA li... 84 9e-033
gb|BJ470501.1|BJ470501 BJ470501 K. Sato unpublished cDNA li... 84 9e-033
gb|BJ470373.1|BJ470373 BJ470373 K. Sato unpublished cDNA li... 84 9e-033
gb|AV932248.1|AV932248 AV932248 K. Sato unpublished cDNA li... 84 9e-033
gb|BU984228.1|BU984228 HF03F15r HF Hordeum vulgare subsp. v... 84 9e-033
gb|BM097016.2|BM097016 EBpi07_SQ002_C04_R pistil, 12 DPA, n... 84 9e-033
gb|BI780292.2|BI780292 EBem06_SQ001_C07_R embryo, 21 DPA, n... 84 9e-033
gb|CA025105.1|CA025105 HZ51D15r HZ Hordeum vulgare subsp. v... 84 1e-032
gb|AJ462878.1|AJ462878 AJ462878 S00002 Hordeum vulgare subs... 82 6e-032
gb|AJ462875.1|AJ462875 AJ462875 S00002 Hordeum vulgare subs... 82 6e-032
gb|CK123626.1|CK123626 BES1824104m03 BES1824 Hordeum vulgar... 82 3e-031
gb|CA030540.1|CA030540 HX07F21r HX Hordeum vulgare subsp. v... 83 7e-031
gb|AL508923.1|AL508923 AL508923 Hordeum vulgare Barke devel... 77 9e-030
gb|BJ474410.1|BJ474410 BJ474410 K. Sato unpublished cDNA li... 77 9e-030
gb|CA028953.1|CA028953 HZ63L18r HZ Hordeum vulgare subsp. v... 76 2e-029
gb|BU976975.1|BU976975 HA10K03u HA Hordeum vulgare subsp. v... 77 8e-029
gb|BU977450.1|BU977450 HA11H06r HA Hordeum vulgare subsp. v... 84 2e-028
gb|AJ462884.1|AJ462884 AJ462884 S00002 Hordeum vulgare subs... 84 6e-026
gb|AJ462876.1|AJ462876 AJ462876 S00002 Hordeum vulgare subs... 75 2e-025
gb|CA013725.1|CA013725 HT09E23r HT Hordeum vulgare subsp. v... 80 1e-024
gb|AV933403.1|AV933403 AV933403 K. Sato unpublished cDNA li... 97 5e-024
gb|BJ469466.1|BJ469466 BJ469466 K. Sato unpublished cDNA li... 97 5e-024
gb|CB882314.1|CB882314 HL01I07w HL Hordeum vulgare subsp. v... 97 2e-023
gb|BU976974.1|BU976974 HA10K03r HA Hordeum vulgare subsp. v... 84 1e-022
gb|AL508555.1|AL508555 AL508555 Hordeum vulgare Barke devel... 77 7e-022
gb|BM368632.2|BM368632 EBem08_SQ004_C18_R embryo, 40 DPA, n... 62 9e-022
>gb|BG369238.2|BG369238 HVSMEi0023E22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0023E22f, mRNA sequence
Length = 809
Score = 96.8 bits (205), Expect(3) = 3e-040
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 138 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 278
Score = 72.5 bits (152), Expect(4) = 2e-029
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 277 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 140
Score = 57.9 bits (120), Expect(3) = 3e-040
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = -1 / +3
Query: 1171 GLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
GLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 3 GLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 131
Score = 55.6 bits (115), Expect(4) = 2e-029
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPL 542
AGCGVATW A FL PVFW GV + S RG+ S PL
Sbjct: 779 AGCGVATWTAXFLSPVFWPDGVQIWPLXSNRGLNITSSRPL 657
Score = 55.1 bits (114), Expect(3) = 3e-040
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 544 KRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
+RG + PL + ++ TP QKTG KK A HVATPHPAK
Sbjct: 655 RRGRLEVILRPLLLXRGQICTPSGQKTGDKKXAVHVATPHPAK 783
Score = 40.9 bits (83), Expect(4) = 2e-029
Identities = 23/43 (53%), Positives = 23/43 (53%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRP 1172
STLT LS F SPRAAWE R G L GLTSRP
Sbjct: 130 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRP 2
Score = 22.6 bits (43), Expect(4) = 2e-029
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -3
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 399 SSAP*LQVCRFPWRLAE*WAPAHPQTQ 319
>gb|BG300442.1|BG300442 HVSMEb0017B08f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0017B08f, mRNA sequence
Length = 870
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 231 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 371
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 72 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 224
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 370 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 233
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 223 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 71
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -1
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 492 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 412
>gb|BE194667.3|BE194667 HVSMEh0086G22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0086G22f, mRNA sequence
Length = 816
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 239 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 379
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 80 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 232
Score = 72.5 bits (152), Expect(3) = 9e-024
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 378 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 241
Score = 51.9 bits (107), Expect(3) = 9e-024
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 231 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 79
Score = 24.0 bits (46), Expect(3) = 9e-024
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 500 SSAPWFQVCRFPWRLAE*WAPAHPQTQ 420
>gb|BQ763249.1|BQ763249 EBro02_SQ007_O13_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_O13 5', mRNA sequence
Length = 705
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 245 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 385
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 86 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 238
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 384 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 247
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 237 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 85
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 506 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 426
>gb|BF625293.2|BF625293 HVSMEa0008E13f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0008E13f, mRNA sequence
Length = 701
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 234 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 374
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 75 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 227
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 373 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 236
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 226 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 74
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -3
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 495 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 415
>gb|BI958424.1|BI958424 HVSMEn0014O14f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0014O14f,
mRNA sequence
Length = 680
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 232 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 372
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 73 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 225
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 371 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 234
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 224 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 72
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 493 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 413
>gb|BQ758832.1|BQ758832 EBma07_SQ002_P22_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_P22 5', mRNA sequence
Length = 677
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 250 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 390
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 91 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 243
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 389 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 252
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 242 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 90
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 511 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 431
>gb|BI951343.1|BI951343 HVSMEl0025J13f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0025J13f, mRNA sequence
Length = 588
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 248 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 388
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 89 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 241
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 387 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 250
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 240 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 88
Score = 23.1 bits (44), Expect(3) = 2e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 509 SSAPWLQVCRFPWRLAE*WAPAHPQTQ 429
>gb|BM376582.2|BM376582 EBem05_SQ002_K04_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_K04 5', mRNA sequence
Length = 574
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 248 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 388
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 89 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 241
Score = 72.5 bits (152), Expect(2) = 7e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 387 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 250
Score = 51.9 bits (107), Expect(2) = 7e-022
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 240 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 88
>gb|BQ758563.1|BQ758563 EBma07_SQ002_J05_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_J05 5', mRNA sequence
Length = 504
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 250 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 390
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 91 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 243
Score = 72.5 bits (152), Expect(2) = 7e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 389 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 252
Score = 51.9 bits (107), Expect(2) = 7e-022
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 242 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 90
>gb|BF622434.2|BF622434 HVSMEa0004E13f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0004E13f, mRNA sequence
Length = 481
Score = 96.8 bits (205), Expect(2) = 3e-036
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 191 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 331
Score = 76.2 bits (160), Expect(2) = 3e-036
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
PP +MEFWGLEVKP ++K P LH+SQAALGE KK D ++V+VD
Sbjct: 32 PPVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVRVD 184
Score = 72.5 bits (152), Expect(2) = 7e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 330 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 193
Score = 51.9 bits (107), Expect(2) = 7e-022
Identities = 28/51 (54%), Positives = 29/51 (56%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ GG
Sbjct: 183 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATGG 31
>gb|CK123576.1|CK123576 BES1824104i08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I084 5-PRIME, mRNA sequence
Length = 736
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 247 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 387
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 88 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 240
Score = 72.5 bits (152), Expect(2) = 6e-021
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 386 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 249
Score = 48.7 bits (100), Expect(2) = 6e-021
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 239 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 87
>gb|CB860150.1|CB860150 HI12N04w HI Hordeum vulgare subsp. vulgare cDNA clone HI12N04
3-PRIME, mRNA sequence
Length = 700
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 252 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 392
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 93 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 245
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 391 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 254
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 244 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 92
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 513 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 433
>gb|CA030068.1|CA030068 HX05P20r HX Hordeum vulgare subsp. vulgare cDNA clone HX05P20
5-PRIME, mRNA sequence
Length = 677
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 250 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 390
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 91 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 243
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 389 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 252
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 242 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 90
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 511 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 431
>gb|CA028189.1|CA028189 HZ61E05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61E05
5-PRIME, mRNA sequence
Length = 655
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 229 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 369
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 70 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 222
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 368 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 231
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 221 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 69
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -1
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 490 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 410
>gb|CA031010.1|CA031010 HX08M05r HX Hordeum vulgare subsp. vulgare cDNA clone HX08M05
5-PRIME, mRNA sequence
Length = 646
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 253 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 393
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 94 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 246
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 392 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 255
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 245 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 93
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -1
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 514 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 434
>gb|CA009677.1|CA009677 HU14M22r HU Hordeum vulgare subsp. vulgare cDNA clone HU14M22
5-PRIME, mRNA sequence
Length = 637
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 209 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 349
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 50 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 202
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -2
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 348 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 211
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -2
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 201 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 49
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -3
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 470 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 390
>gb|BQ460816.1|BQ460816 HA05N08r HA Hordeum vulgare subsp. vulgare cDNA clone HA05N08
5-PRIME, mRNA sequence
Length = 615
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 189 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 329
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 30 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 182
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 328 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 191
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 181 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 29
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -1
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 450 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 370
>gb|CA020686.1|CA020686 HZ37C22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37C22
5-PRIME, mRNA sequence
Length = 544
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 255 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 395
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 96 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 248
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 394 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 257
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 247 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 95
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 516 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 436
>gb|BQ470370.1|BQ470370 HX02L20r HX Hordeum vulgare subsp. vulgare cDNA clone HX02L20
5-PRIME, mRNA sequence
Length = 538
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 253 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 393
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 94 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 246
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 392 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 255
Score = 48.7 bits (100), Expect(3) = 1e-022
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 245 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 93
Score = 23.1 bits (44), Expect(3) = 1e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -1
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 514 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 434
>gb|CA009469.1|CA009469 HU14D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU14D11
5-PRIME, mRNA sequence
Length = 500
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 257 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 397
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 98 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 250
Score = 72.5 bits (152), Expect(2) = 6e-021
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -3
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 396 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 259
Score = 48.7 bits (100), Expect(2) = 6e-021
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 249 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 97
>gb|BU982124.1|BU982124 HA25J14r HA Hordeum vulgare subsp. vulgare cDNA clone HA25J14
5-PRIME, mRNA sequence
Length = 473
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 256 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 396
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 97 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 249
Score = 72.5 bits (152), Expect(2) = 6e-021
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 395 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 258
Score = 48.7 bits (100), Expect(2) = 6e-021
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 248 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 96
>gb|CA004420.1|CA004420 HS17I13r HS Hordeum vulgare subsp. vulgare cDNA clone HS17I13
5-PRIME, mRNA sequence
Length = 463
Score = 96.8 bits (205), Expect(2) = 1e-035
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 255 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 395
Score = 73.9 bits (155), Expect(2) = 1e-035
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 96 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 248
Score = 72.5 bits (152), Expect(2) = 6e-021
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 394 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 257
Score = 48.7 bits (100), Expect(2) = 6e-021
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQNSIDGGG 1196
STLT LS F SPRAAWE R G L GLTSRPQNS+ G
Sbjct: 247 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQNSMATDG 95
>gb|AV916174.1|AV916174 AV916174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p04 5', mRNA sequence
Length = 692
Score = 96.8 bits (205), Expect(2) = 1e-033
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQP 899
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP
Sbjct: 241 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQP 381
Score = 72.5 bits (152), Expect(3) = 9e-022
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +3 / -1
Query: 900 GCSTL*PEKNTLVVFDVCDSSNSLLKTKSNCICGYLSIESVPMASF 1037
G TL*PEK TLVV ++CDSSNS KT+SN I G LSIE VPMASF
Sbjct: 380 GWKTL*PEKKTLVVLELCDSSNSFSKTRSNWI*GNLSIERVPMASF 243
Score = 67.0 bits (140), Expect(2) = 1e-033
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = -1 / +1
Query: 1177 FWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
FWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 100 FWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 234
Score = 46.0 bits (94), Expect(3) = 9e-022
Identities = 25/45 (55%), Positives = 25/45 (55%)
Frame = +3 / -1
Query: 1044 STLTYIKALSLFFDSPRAAWETCRIKPCPGSHLTVDPGLTSRPQN 1178
STLT LS F SPRAAWE R G L GLTSRPQN
Sbjct: 233 STLTNKVVLSSFLTSPRAAWERWRKWSSSGETLMDWLGLTSRPQN 99
Score = 23.1 bits (44), Expect(3) = 9e-022
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -2
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 502 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 422
>gb|BU977451.1|BU977451 HA11H06u HA Hordeum vulgare subsp. vulgare cDNA clone HA11H06
3-PRIME, mRNA sequence
Length = 550
Score = 84.9 bits (179), Expect(2) = 7e-033
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = -1 / -3
Query: 553 AGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
+GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 539 SGKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 402
Score = 76.7 bits (161), Expect(2) = 7e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 416 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 264
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 406 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 537
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 265 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 378
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 367 DLSLVAGVLP 396
>gb|AV921301.1|AV921301 AV921301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p04 3', mRNA sequence
Length = 714
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 533 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 399
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 413 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 261
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 403 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 534
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 262 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 375
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 364 DLSLVAGVLP 393
>gb|BU998985.1|BU998985 HI12N04r HI Hordeum vulgare subsp. vulgare cDNA clone HI12N04
5-PRIME, mRNA sequence
Length = 636
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -1
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 552 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 418
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 432 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 280
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 422 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 553
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 281 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 394
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 383 DLSLVAGVLP 412
>gb|BG343313.2|BG343313 HVSMEg0005G06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005G06f, mRNA sequence
Length = 615
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 44 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 178
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 164 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 316
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 174 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 43
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 315 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 202
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 213 DLSLVAGVLP 184
>gb|BJ469205.1|BJ469205 BJ469205 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13k14 5', mRNA sequence
Length = 610
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +3
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 60 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 194
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 180 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 332
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 190 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 59
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 331 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 218
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 229 DLSLVAGVLP 200
>gb|CB875130.1|CB875130 HX07F21w HX Hordeum vulgare subsp. vulgare cDNA clone HX07F21
3-PRIME, mRNA sequence
Length = 590
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -1
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 368 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 234
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 248 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 96
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 238 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 369
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 97 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 210
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 199 DLSLVAGVLP 228
>gb|BJ471803.1|BJ471803 BJ471803 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21m01 5', mRNA sequence
Length = 583
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 8 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 142
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 128 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 280
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 138 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 7
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 279 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 166
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 177 DLSLVAGVLP 148
>gb|AV935849.1|AV935849 AV935849 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6l08 3', mRNA sequence
Length = 572
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -3
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 528 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 394
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 408 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 256
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 398 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 529
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 257 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 370
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 359 DLSLVAGVLP 388
>gb|AV935089.1|AV935089 AV935089 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2n16 3', mRNA sequence
Length = 569
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -3
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 510 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 376
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 390 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 238
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 380 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 511
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 239 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 352
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 341 DLSLVAGVLP 370
>gb|BJ475147.1|BJ475147 BJ475147 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21m01 3', mRNA sequence
Length = 569
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / -3
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 510 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 376
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 390 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 238
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 380 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 511
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 239 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 352
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 341 DLSLVAGVLP 370
>gb|BJ470501.1|BJ470501 BJ470501 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22o17 5', mRNA sequence
Length = 566
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +1
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 1 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 135
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 121 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 273
Score = 68.9 bits (144), Expect(3) = 2e-025
Identities = 28/42 (66%), Positives = 29/42 (69%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLF 545
AGCGVATW APFL PVFW GVA AFLS GV + A LF
Sbjct: 131 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALF 6
Score = 63.4 bits (132), Expect(3) = 2e-025
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 272 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 159
Score = 22.1 bits (42), Expect(3) = 2e-025
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 170 DLSLVAGVLP 141
>gb|BJ470373.1|BJ470373 BJ470373 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16o03 5', mRNA sequence
Length = 551
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 71 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 205
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 191 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 343
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 201 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 70
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -3
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 342 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 229
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 240 DLSLVAGVLP 211
>gb|AV932248.1|AV932248 AV932248 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2n16 5', mRNA sequence
Length = 548
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 62 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 196
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 182 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 334
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 192 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 61
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -3
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 333 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 220
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 231 DLSLVAGVLP 202
>gb|BU984228.1|BU984228 HF03F15r HF Hordeum vulgare subsp. vulgare cDNA clone HF03F15
5-PRIME, mRNA sequence
Length = 488
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 83 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 217
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 203 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 355
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 213 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 82
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -3
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 354 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 241
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 252 DLSLVAGVLP 223
>gb|BM097016.2|BM097016 EBpi07_SQ002_C04_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_C04 5', mRNA sequence
Length = 485
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +1
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 25 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 159
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 145 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 297
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 155 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 24
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 296 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 183
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 194 DLSLVAGVLP 165
>gb|BI780292.2|BI780292 EBem06_SQ001_C07_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_C07 5', mRNA sequence
Length = 456
Score = 84.5 bits (178), Expect(2) = 9e-033
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +2
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 20 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 154
Score = 76.7 bits (161), Expect(2) = 9e-033
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 140 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 292
Score = 72.1 bits (151), Expect(3) = 2e-026
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 150 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 19
Score = 63.4 bits (132), Expect(3) = 2e-026
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 291 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 178
Score = 22.1 bits (42), Expect(3) = 2e-026
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 189 DLSLVAGVLP 160
>gb|CA025105.1|CA025105 HZ51D15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D15
5-PRIME, mRNA sequence
Length = 486
Score = 84.5 bits (178), Expect(2) = 1e-032
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +3
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 216 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 350
Score = 76.2 bits (160), Expect(2) = 1e-032
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = -1 / +3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK 275
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK
Sbjct: 336 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK 485
Score = 72.1 bits (151), Expect(3) = 2e-025
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 346 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 215
Score = 59.7 bits (124), Expect(3) = 2e-025
Identities = 25/37 (67%), Positives = 27/37 (72%)
Frame = +3 / -3
Query: 276 LAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
LA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 484 LAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 374
Score = 22.1 bits (42), Expect(3) = 2e-025
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 385 DLSLVAGVLP 356
>gb|AJ462878.1|AJ462878 AJ462878 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070A12F1, mRNA sequence
Length = 420
Score = 81.7 bits (172), Expect(2) = 6e-032
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = -1 / +2
Query: 547 KKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
KKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 2 KKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 133
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 119 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 271
Score = 68.9 bits (144), Expect(3) = 4e-025
Identities = 28/42 (66%), Positives = 29/42 (69%)
Frame = +3 / -1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLF 545
AGCGVATW APFL PVFW GVA AFLS GV + A LF
Sbjct: 129 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALF 4
Score = 62.0 bits (129), Expect(3) = 4e-025
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +3 / -1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL +A SLLNVL+HDLQ TDPPD GD S+
Sbjct: 270 HLAACLALACEAKATSLLNVLVHDLQATDPPDLGDLSL 157
Score = 22.1 bits (42), Expect(3) = 4e-025
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 168 DLSLVAGVLP 139
>gb|AJ462875.1|AJ462875 AJ462875 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200049D12F1, mRNA sequence
Length = 300
Score = 81.7 bits (172), Expect(2) = 6e-032
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
KKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 4 KKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 135
Score = 76.7 bits (161), Expect(2) = 6e-032
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 121 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 273
Score = 68.9 bits (144), Expect(3) = 4e-025
Identities = 28/42 (66%), Positives = 29/42 (69%)
Frame = +3 / -2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLF 545
AGCGVATW APFL PVFW GVA AFLS GV + A LF
Sbjct: 131 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALF 6
Score = 62.0 bits (129), Expect(3) = 4e-025
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +3 / -2
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL +A SLLNVL+HDLQ TDPPD GD S+
Sbjct: 272 HLAACLALACEAKATSLLNVLVHDLQATDPPDLGDLSL 159
Score = 22.1 bits (42), Expect(3) = 4e-025
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 170 DLSLVAGVLP 141
>gb|CK123626.1|CK123626 BES1824104m03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M034 5-PRIME, mRNA sequence
Length = 491
Score = 82.2 bits (173), Expect(2) = 3e-031
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = -1 / +1
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFS 920
+KLAIGTLS+D +PQIQFDLVF KEFELSH SKTTSVFFS
Sbjct: 247 QKLAIGTLSMDXFPQIQFDLVFEKEFELSHNSKTTSVFFS 366
Score = 73.9 bits (155), Expect(2) = 3e-031
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 88 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 240
>gb|CA030540.1|CA030540 HX07F21r HX Hordeum vulgare subsp. vulgare cDNA clone HX07F21
5-PRIME, mRNA sequence
Length = 319
Score = 83.1 bits (175), Expect(2) = 7e-031
Identities = 34/44 (77%), Positives = 37/44 (84%)
Frame = -1 / +2
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 908
+KL IGTLS+DK+PQIQFDLVF KE L H SKTTSVFFSGY V
Sbjct: 188 QKLTIGTLSMDKFPQIQFDLVFEKEXXLXHNSKTTSVFFSGYNV 319
Score = 71.6 bits (150), Expect(2) = 7e-031
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = -1 / +2
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLE KP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 29 PSVAMEFWGLEXKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 181
>gb|AL508923.1|AL508923 AL508923 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10D05V 5',
mRNA sequence
Length = 545
Score = 76.7 bits (161), Expect(2) = 9e-030
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 449 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 297
Score = 74.4 bits (156), Expect(2) = 9e-030
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -1 / -1
Query: 523 LKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
+KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 542 IKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 435
Score = 64.3 bits (134), Expect(3) = 4e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / +1
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGV 518
AGCGVATW APFL PVFW GVA AFLS GV
Sbjct: 439 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGV 537
Score = 63.4 bits (132), Expect(3) = 4e-024
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 298 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 411
Score = 22.1 bits (42), Expect(3) = 4e-024
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 400 DLSLVAGVLP 429
>gb|BJ474410.1|BJ474410 BJ474410 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13k14 3', mRNA sequence
Length = 522
Score = 76.7 bits (161), Expect(2) = 9e-030
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 421 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 269
Score = 74.4 bits (156), Expect(2) = 9e-030
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -1 / -3
Query: 523 LKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
+KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 514 IKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 407
Score = 64.3 bits (134), Expect(3) = 4e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / +3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGV 518
AGCGVATW APFL PVFW GVA AFLS GV
Sbjct: 411 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGV 509
Score = 63.4 bits (132), Expect(3) = 4e-024
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +3
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 270 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 383
Score = 22.1 bits (42), Expect(3) = 4e-024
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 372 DLSLVAGVLP 401
>gb|CA028953.1|CA028953 HZ63L18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L18
5-PRIME, mRNA sequence
Length = 365
Score = 75.8 bits (159), Expect(2) = 2e-029
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -1 / +3
Query: 1039 KKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTS 932
+KLAIGTLS+DK+PQIQFDLVF KEFELSH SKTTS
Sbjct: 258 QKLAIGTLSMDKFPQIQFDLVFEKEFELSHNSKTTS 365
Score = 73.9 bits (155), Expect(2) = 2e-029
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = -1 / +3
Query: 1195 PPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVD 1043
P +MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD
Sbjct: 99 PSVAMEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD 251
>gb|BU976975.1|BU976975 HA10K03u HA Hordeum vulgare subsp. vulgare cDNA clone HA10K03
3-PRIME, mRNA sequence
Length = 554
Score = 76.7 bits (161), Expect(2) = 8e-029
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = -1 / -2
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGAK* 272
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+KAKH AK*
Sbjct: 466 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHAKAKHAAK* 314
Score = 71.2 bits (149), Expect(2) = 8e-029
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = -1 / -2
Query: 517 TPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
TP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 553 TPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 452
Score = 64.3 bits (134), Expect(3) = 4e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / +3
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGV 518
AGCGVATW APFL PVFW GVA AFLS GV
Sbjct: 456 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGV 554
Score = 63.4 bits (132), Expect(3) = 4e-024
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = +3 / +3
Query: 273 HLAPCFALE*ACRAISLLNVLLHDLQGTDPPDFGDFSV 386
HLA C AL RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 315 HLAACLALACEARATSLLNVLVHDLQATDPPDLGDLSL 428
Score = 22.1 bits (42), Expect(3) = 4e-024
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +3
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 417 DLSLVAGVLP 446
>gb|BU977450.1|BU977450 HA11H06r HA Hordeum vulgare subsp. vulgare cDNA clone HA11H06
5-PRIME, mRNA sequence
Length = 591
Score = 84.5 bits (178), Expect(2) = 2e-028
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -1 / +1
Query: 550 GKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK 416
GKKR A + +KTP++DKKAK+ATP QKTG KKGA HVATPHPAK
Sbjct: 343 GKKRAAGSDIKTPVADKKAKIATPSGQKTGDKKGAVHVATPHPAK 477
Score = 72.1 bits (151), Expect(4) = 3e-023
Identities = 29/44 (65%), Positives = 30/44 (68%)
Frame = +3 / -2
Query: 420 AGCGVATWVAPFLPPVFWAGGVATFAFLSERGVFRAFSAPLFLP 551
AGCGVATW APFL PVFW GVA AFLS GV + A LF P
Sbjct: 473 AGCGVATWTAPFLSPVFWPDGVAILAFLSATGVLISLPAALFFP 342
Score = 62.0 bits (129), Expect(2) = 2e-028
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHS 296
P K +++KSPKSGGSV CKSC+KTFNSE+AL +H+
Sbjct: 463 PHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALASHA 591
Score = 51.5 bits (106), Expect(4) = 3e-023
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +3 / -2
Query: 309 RAISLLNVLLHDLQGTDPPDFGDFSV 386
RA SLLNVL+HDLQ TDPPD GD S+
Sbjct: 578 RATSLLNVLVHDLQATDPPDLGDLSL 501
Score = 23.1 bits (44), Expect(4) = 3e-023
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1 / -3
Query: 796 SAPPSHHLCHFP*LLECLAPPLHPQNQ 876
S+ P +C FP L P HPQ Q
Sbjct: 91 SSAPWLQVCRFPWRLPE*WAPAHPQTQ 11
Score = 22.1 bits (42), Expect(4) = 3e-023
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 387 DLSLFAGVLP 416
DLSL AGVLP
Sbjct: 512 DLSLVAGVLP 483
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 596,177,790
Number of Sequences: 312970
Number of extensions: 10546690
Number of successful extensions: 75907
Number of sequences better than 1.0e-020: 83
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 15796910682
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)