TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 80 2e-016
gb|CN818591.1|CN818591 HRO4454_H08_P16ZS5 Lib AA070E1X Aven... 55 8e-009
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 31 0.11
gb|CN815286.1|CN815286 HRO4508_A05_B10ZS5 Lib AA071E1X Aven... 28 0.52
gb|CN819095.1|CN819095 HRO4468_H10_O20ZS5 Lib AA070E1X Aven... 29 0.55
gb|BE439349.1|BE439349 CDO1449_WHE05F06R ITEC CDO Oat cDNA ... 28 0.71
gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Aven... 28 0.98
gb|CN815770.1|CN815770 HRO4510_C10_E20ZS5 Lib AA071E1X Aven... 28 0.98
gb|CN815624.1|CN815624 HRO4513_G02_M03ZS5 Lib AA071E1X Aven... 28 1.0
gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Aven... 27 1.3
gb|CN818697.1|CN818697 HRO4457_F05_L09ZS5 Lib AA070E1X Aven... 27 1.3
gb|CN816222.1|CN816222 HRO4518_C10_E20ZS5 Lib AA071E1X Aven... 28 1.4
gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Aven... 28 1.4
gb|CN816946.1|CN816946 HRO4526_E11_I22ZS5 Lib AA071E1X Aven... 26 2.5
gb|CN820892.1|CN820892 HRO4421_B06_C11ZS5 Lib AA069E1X Aven... 27 2.6
gb|CN816302.1|CN816302 HRO4519_C01_F01ZS5 Lib AA071E1X Aven... 26 3.5
gb|AA231763.1|AA231763 CDO412.F cDNA from oat Avena sativa ... 25 4.8
gb|BE439133.1|BE439133 CDO412_WHE2F0112F ITEC CDO Oat cDNA ... 25 4.8
gb|CN815564.1|CN815564 HRO4513_A11_A21ZS5 Lib AA071E1X Aven... 25 4.8
gb|CN816971.1|CN816971 HRO4526_H01_O02ZS5 Lib AA071E1X Aven... 25 4.8
gb|CN820317.1|CN820317 HRO4418_A05_A10ZS5 Lib AA069E1X Aven... 25 4.8
gb|CN820847.1|CN820847 HRO4420_E12_J24ZS5 Lib AA069E1X Aven... 25 4.8
emb|X75778.1|ASTCPP1A A.sativa (Pewi) ASTCP-K36 mRNA for t ... 25 4.8
gb|CN814868.1|CN814868 HRO4503_D03_H05ZS5 Lib AA071E1X Aven... 26 4.8
gb|CN815629.1|CN815629 HRO4513_G07_M13ZS5 Lib AA071E1X Aven... 26 4.8
gb|CN820840.1|CN820840 HRO4420_E03_J06ZS5 Lib AA069E1X Aven... 26 4.8
gb|CN819791.1|CN819791 HRO4404_B03_D06ZS5 Lib AA069E1X Aven... 25 6.6
gb|CN820327.1|CN820327 HRO4418_B04_C08ZS5 Lib AA069E1X Aven... 25 6.6
gb|CN820831.1|CN820831 HRO4420_D04_H08ZS5 Lib AA069E1X Aven... 25 6.6
gb|CN821161.1|CN821161 HRO4428_B10_D20ZS5 Lib AA069E1X Aven... 25 6.6
gb|CN821408.1|CN821408 HRO4425_A01_A01ZS5 Lib AA069E1X Aven... 25 6.6
gb|CN815758.1|CN815758 HRO4510_B10_C20ZS5 Lib AA071E1X Aven... 25 9.0
gb|CN818436.1|CN818436 HRO4459_D12_G23ZS5 Lib AA070E1X Aven... 20 9.0
gb|CN815288.1|CN815288 HRO4508_A07_B14ZS5 Lib AA071E1X Aven... 24 9.1
gb|CN818798.1|CN818798 HRO4456_C01_E02ZS5 Lib AA070E1X Aven... 24 9.1
gb|CN821033.1|CN821033 HRO4422_G08_M16ZS5 Lib AA069E1X Aven... 24 9.1
gb|CN821330.1|CN821330 HRO4424_B02_D04ZS5 Lib AA069E1X Aven... 24 9.1
gb|CN821574.1|CN821574 HRO4426_H03_O06ZS5 Lib AA069E1X Aven... 24 9.1
gb|CN819372.1|CN819372 HRO4405_C01_E01ZS5 Lib AA069E1X Aven... 20 9.2
gb|CN815812.1|CN815812 HRO4510_G05_M10ZS5 Lib AA071E1X Aven... 20 9.2
gb|CN817004.1|CN817004 HRO4527_B11_D21ZS5 Lib AA071E1X Aven... 20 9.2
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 80.0 bits (172), Expect = 2e-016
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +1 / +2
Query: 4 GAFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKK 144
GAF +EE LII+LH+ +GN+W+++AA LPGRTDNEIKN WN+ IK+
Sbjct: 551 GAFTPEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691
Score = 39.3 bits (81), Expect = 3e-004
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = -1 / -1
Query: 141 LDARVP*ILDLIISPPWQLRCNLRPPVPEDSVQLDDEVFFVLGECP 4
L + +P IL IIS WQ+ + RP V V+LDDE + GE P
Sbjct: 688 LYSSIPVILYFIISTSWQISSHPRPLVSHLGVELDDEPLLLGGEGP 551
Score = 33.9 bits (69), Expect = 0.011
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = -2 / -2
Query: 128 FHRFLISLSVLPGSCAAI*DHLFP 57
F F ISLSV PG AAI HLFP
Sbjct: 675 FQ*FFISLSVRPGKLAAILAHLFP 604
>gb|CN818591.1|CN818591 HRO4454_H08_P16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_H08_P16, mRNA sequence
Length = 502
Score = 54.9 bits (116), Expect = 8e-009
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1 / +1
Query: 10 FAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 126
F + EEDL+ +H ++GNRW IA ++PGRT E++ W
Sbjct: 202 FTEAEEDLVFRMHRLVGNRWELIAGRIPGRTAKEVEMFW 318
Score = 29.4 bits (59), Expect = 0.28
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2 / -3
Query: 110 SLSVLPGSCAAI*DHLFPRTAC 45
S +VLPG AI HLFP + C
Sbjct: 302 SFAVLPGILPAISSHLFPTSLC 237
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 30.7 bits (62), Expect = 0.11
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2 / +2
Query: 233 REPQGPATSTHQALVLWGT*APSSARRLNHQC*CPCTTRIVLKHQTWHALSCHQRSCS 406
R + P H + + GT S + HQ CT ++ K Q C+ RSC+
Sbjct: 500 RPRENPGVKIHSMIRITGTKMAYSFQPSTHQVSLKCTCKLNDKWQLHLCFVCYLRSCN 673
>gb|CN815286.1|CN815286 HRO4508_A05_B10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A05_B10, mRNA sequence
Length = 641
Score = 28.5 bits (57), Expect = 0.52
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2 / -1
Query: 158 FCLSFFLMHEFHRFLISLSVLPGSCAAI*DHLFPRT 51
F ++ F+ HR IS S+ P S I +FPR+
Sbjct: 236 FPINHFVRRHSHRIFISSSISPYSIILIFSPIFPRS 129
>gb|CN819095.1|CN819095 HRO4468_H10_O20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_H10_O20, mRNA sequence
Length = 737
Score = 28.9 bits (58), Expect = 0.55
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1 / +1
Query: 97 RTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADHGGAAPTIST 231
RT NLW S ++ G+ H P T D G A PT ST
Sbjct: 379 RTTRTPCNLW*SRLRL*TAWSGLICYLHSPATGFDWGYAKPTTST 513
>gb|BE439349.1|BE439349 CDO1449_WHE05F06R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1449_WHE05, mRNA sequence
Length = 301
Score = 28.0 bits (56), Expect = 0.71
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2 / +3
Query: 215 LPPSAPREPQGPATSTHQALVLWGT*AP 298
LPP P P A A V WG *AP
Sbjct: 195 LPPQGPGSPVPCAAHQQDAFVRWG**AP 278
>gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A05_B09, mRNA sequence
Length = 808
Score = 27.6 bits (55), Expect = 0.98
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2 / -3
Query: 140 LMHEFHRFLISLSVL 96
L+HEF+ FLI+LS+L
Sbjct: 185 LLHEFYHFLITLSLL 141
>gb|CN815770.1|CN815770 HRO4510_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C10_E20, mRNA sequence
Length = 647
Score = 27.6 bits (55), Expect = 0.98
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2 / -3
Query: 380 LSCHQRSCSWSSLLLDTRVHQPATHQAKL 466
+SCH R C+ +SL T PA + KL
Sbjct: 519 ISCHHRICTATSLAAKTLTFPPAHLRQKL 433
>gb|CN815624.1|CN815624 HRO4513_G02_M03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G02_M03, mRNA sequence
Length = 667
Score = 28.0 bits (56), Expect = 1.0
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +1 / -3
Query: 208 GAAPTISTERTSGSSDINPSSTGPLGNLSPLLSETAQSSMLMPVYDKNRAETPNLARP 381
G + +S ++ S D++P ++ ++ PL +E ++ ++ + + TPN +RP
Sbjct: 329 GTSGHVSVMNSTTSYDMSPCTSICSFSVGPLTTEAPVANFFPSFFEASLSFTPNNSRP 156
>gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E11_J21, mRNA sequence
Length = 736
Score = 27.2 bits (54), Expect = 1.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 374 HALSCHQRSC 403
HA+SCHQR C
Sbjct: 698 HAISCHQRQC 727
>gb|CN818697.1|CN818697 HRO4457_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_F05_L09, mRNA sequence
Length = 744
Score = 27.2 bits (54), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1 / -3
Query: 96 PWQLRCNLRPPVPEDSVQLDDEV 28
PWQ LR +PE + + +E+
Sbjct: 547 PWQATSRLRSAIPEGLIHIQEEI 479
>gb|CN816222.1|CN816222 HRO4518_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C10_E20, mRNA sequence
Length = 785
Score = 27.6 bits (55), Expect = 1.4
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1 / +3
Query: 226 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 324
S E+ SSDI S PL LSPLL T S
Sbjct: 351 SNEKKITSSDIPLKSHTPLVYLSPLLEGTVMDS 449
>gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D10_G19, mRNA sequence
Length = 791
Score = 27.6 bits (55), Expect = 1.4
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1 / +3
Query: 226 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 324
S E+ SSDI S PL LSPLL T S
Sbjct: 399 SNEKKITSSDIPLKSHTPLVYLSPLLEGTVMDS 497
>gb|CN816946.1|CN816946 HRO4526_E11_I22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E11_I22, mRNA sequence
Length = 800
Score = 26.3 bits (52), Expect = 2.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2 / -1
Query: 137 SRRS*GRKALIPTPTSHLLRLITAVQLPPSAPREPQGPATSTHQA 271
S+R K PT R++ + P +A + Q P+T+ HQ+
Sbjct: 626 SQRPSSSKTQAPTRRVECTRVLREAERPRAAAQWRQTPSTARHQS 492
>gb|CN820892.1|CN820892 HRO4421_B06_C11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_B06_C11, mRNA
sequence
Length = 474
Score = 26.7 bits (53), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +2
Query: 157 KGIDPNTHKPLTEADHGGAA 216
+G P H+PL EAD G +A
Sbjct: 170 QGAVPGVHRPLGEADQGPSA 229
>gb|CN816302.1|CN816302 HRO4519_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C01_F01, mRNA sequence
Length = 592
Score = 26.3 bits (52), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / -3
Query: 118 NLWNSCIKKKLRQKGIDPNTH 180
N W K+K+RQ+ +DP H
Sbjct: 107 NEWGGHGKRKIRQERLDPGLH 45
>gb|AA231763.1|AA231763 CDO412.F cDNA from oat Avena sativa cDNA clone CDO412, mRNA
sequence
Length = 371
Score = 25.4 bits (50), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1 / +3
Query: 234 LGADGGSCTAVISLSKWLVGVGI 166
LG SCT +ISL W + +G+
Sbjct: 33 LGQ*QTSCTTIISLQPWYLLIGM 101
>gb|BE439133.1|BE439133 CDO412_WHE2F0112F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO412_WHE2, mRNA sequence
Length = 289
Score = 25.4 bits (50), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1 / +2
Query: 234 LGADGGSCTAVISLSKWLVGVGI 166
LG SCT +ISL W + +G+
Sbjct: 8 LGQ*QTSCTTIISLQPWYLLIGM 76
>gb|CN815564.1|CN815564 HRO4513_A11_A21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_A11_A21, mRNA sequence
Length = 740
Score = 25.4 bits (50), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 209 PP*SASVSGLWVLGSMPFCLSFFLMH 132
PP +++VSG++ S F +FF +H
Sbjct: 409 PPTTSTVSGIYSSSSGSFFRAFFTIH 332
>gb|CN816971.1|CN816971 HRO4526_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_H01_O02, mRNA sequence
Length = 678
Score = 25.4 bits (50), Expect = 4.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / +1
Query: 134 HEFHRFLISLSVLPGSC 84
H+ HR LI+ ++ GSC
Sbjct: 625 HQLHRLLITTLLITGSC 675
>gb|CN820317.1|CN820317 HRO4418_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_A05_A10, mRNA
sequence
Length = 754
Score = 25.4 bits (50), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 209 PP*SASVSGLWVLGSMPFCLSFFLMH 132
PP +++VSG++ S F +FF +H
Sbjct: 423 PPTTSTVSGIYSSSSGSFFSAFFTIH 346
>gb|CN820847.1|CN820847 HRO4420_E12_J24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E12_J24, mRNA
sequence
Length = 518
Score = 25.4 bits (50), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2 / -3
Query: 380 LSCHQRSCSWSSLLLDTRVHQPATHQAK 463
LSCH SC LLL+ ++ Q ++ +K
Sbjct: 348 LSCHYESCICGILLLNDQLVQVSSRCSK 265
>emb|X75778.1|ASTCPP1A A.sativa (Pewi) ASTCP-K36 mRNA for t complex polypeptide 1
Length = 2022
Score = 25.4 bits (50), Expect = 4.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2 / -1
Query: 83 RSCQGGLIMRSRIYGTRASRRS*GRKALIPTPTSHLL 193
+SC GL R + GT R K + P SHL+
Sbjct: 639 QSCHAGLHQRLNVCGTELIFRGDAFKVINSYP*SHLI 529
>gb|CN814868.1|CN814868 HRO4503_D03_H05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D03_H05, mRNA sequence
Length = 677
Score = 25.8 bits (51), Expect = 4.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 139 KKKLRQKGIDPNTHKPLTEADH 204
+ K Q +D TH+P+ ADH
Sbjct: 421 RNKQNQVKLDTETHQPVHSADH 486
>gb|CN815629.1|CN815629 HRO4513_G07_M13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G07_M13, mRNA sequence
Length = 689
Score = 25.8 bits (51), Expect = 4.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1 / +3
Query: 226 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 324
S E+ SDI S PL LSPLL T S
Sbjct: 351 SNEKKITGSDIPLKSHTPLVYLSPLLEGTVMDS 449
>gb|CN820840.1|CN820840 HRO4420_E03_J06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E03_J06, mRNA
sequence
Length = 348
Score = 25.8 bits (51), Expect = 4.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1 / +2
Query: 226 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 324
S E+ SDI S PL LSPLL T S
Sbjct: 53 SNEKKITGSDIPLKSHTPLVYLSPLLEGTVMDS 151
>gb|CN819791.1|CN819791 HRO4404_B03_D06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_B03_D06, mRNA
sequence
Length = 835
Score = 24.9 bits (49), Expect = 6.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1 / +2
Query: 207 AVISLSKWLVGVGINAFLPQLLLDARVP*ILDLIISPPWQLRCNL 73
A + + L+G+ + Q D P LI+ PP +LR L
Sbjct: 122 ATVFFERGLIGIAVALIRVQRRHDDICPLFRHLIMGPPSELRMTL 256
>gb|CN820327.1|CN820327 HRO4418_B04_C08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B04_C08, mRNA
sequence
Length = 766
Score = 24.9 bits (49), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2 / -1
Query: 206 P*SASVSGLWVLGSMPFCLSFFLMHEFHRFLI 111
P S + G + FCL FFL+ HR L+
Sbjct: 592 PGSRTPPGRTSCSFLVFCLIFFLLFLQHRLLV 497
>gb|CN820831.1|CN820831 HRO4420_D04_H08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_D04_H08, mRNA
sequence
Length = 754
Score = 24.9 bits (49), Expect = 6.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2 / -2
Query: 335 PCTTRIVLKHQTWHALSCHQRSCSW 409
PC++R ++ W LSC+ W
Sbjct: 318 PCSSRSLMVPFLWMFLSCYNMQFHW 244
>gb|CN821161.1|CN821161 HRO4428_B10_D20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B10_D20, mRNA
sequence
Length = 429
Score = 24.9 bits (49), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2 / -2
Query: 206 P*SASVSGLWVLGSMPFCLSFFLMHEFHRFLI 111
P S + G + FCL FFL+ HR L+
Sbjct: 158 PGSRTPPGRTSCSFLVFCLIFFLLFLQHRLLV 63
>gb|CN821408.1|CN821408 HRO4425_A01_A01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_A01_A01, mRNA
sequence
Length = 597
Score = 24.9 bits (49), Expect = 6.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2 / +2
Query: 215 LPPSAPREPQGPATSTHQALVLWGT*AP 298
LPP P A A V WG *AP
Sbjct: 98 LPPQGQSSPIPCAAHQQDAFVCWG**AP 181
>gb|CN815758.1|CN815758 HRO4510_B10_C20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_B10_C20, mRNA sequence
Length = 770
Score = 24.9 bits (49), Expect = 9.0
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1 / -2
Query: 250 SDINPSSTGPLGNLSPLLSETAQSSMLMPVYDKNRAETPNLARPKLP 390
S + PSS+ G + LS + S+ + +YD E ++ +P
Sbjct: 769 SSVLPSSSNTCGTFT*QLSNLEEDSISVQIYDPKMKEVTVVSDNDVP 629
>gb|CN818436.1|CN818436 HRO4459_D12_G23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_D12_G23, mRNA sequence
Length = 313
Score = 20.4 bits (39), Expect(2) = 9.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +2 / -2
Query: 359 KHQTWHALSCHQRSCSW 409
KH+ SC +CSW
Sbjct: 114 KHRQVQLNSCRGCTCSW 64
Score = 19.5 bits (37), Expect(2) = 9.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -3
Query: 132 VHQEEAEAERH*SQH 176
VHQ+E+ AER H
Sbjct: 236 VHQDESIAERASKPH 192
>gb|CN815288.1|CN815288 HRO4508_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A07_B14, mRNA sequence
Length = 482
Score = 24.5 bits (48), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2 / +2
Query: 218 PPSAPREPQGPATSTHQ 268
PP P E QGP S +Q
Sbjct: 92 PPQDPEEGQGPQVSQNQ 142
>gb|CN818798.1|CN818798 HRO4456_C01_E02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_C01_E02, mRNA sequence
Length = 628
Score = 24.5 bits (48), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 377 ALSCHQRSCSWSS 415
+LS H RSCSW S
Sbjct: 171 SLSGHARSCSWVS 209
>gb|CN821033.1|CN821033 HRO4422_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G08_M16, mRNA
sequence
Length = 586
Score = 24.5 bits (48), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2 / -1
Query: 374 HALSCHQRSCSWSSLLLDTRVHQPATHQAKLS 469
H + + + CSW S L HQ + KLS
Sbjct: 454 HFIYMY*KRCSWYSSSLSCEAHQFSKFNFKLS 359
>gb|CN821330.1|CN821330 HRO4424_B02_D04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_B02_D04, mRNA
sequence
Length = 551
Score = 24.5 bits (48), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 200 SASVSGLWVLGSMPFCLSFFLMHEFHRFLISLSVL 96
S+SV W+ G C FFL+ FL+ S++
Sbjct: 396 SSSVCWKWIAGLEVECPCFFLVLPKEPFLVFFSLV 500
>gb|CN821574.1|CN821574 HRO4426_H03_O06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_H03_O06, mRNA
sequence
Length = 635
Score = 24.5 bits (48), Expect = 9.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 305 LRRGLKFPRGPVL 267
++RGL FP GP+L
Sbjct: 544 MQRGLYFPMGPIL 582
>gb|CN819372.1|CN819372 HRO4405_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_C01_E01, mRNA
sequence
Length = 321
Score = 20.4 bits (39), Expect(2) = 9.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +2 / -3
Query: 359 KHQTWHALSCHQRSCSW 409
KH+ SC +CSW
Sbjct: 103 KHRQVQLNSCRGCTCSW 53
Score = 19.5 bits (37), Expect(2) = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 132 VHQEEAEAERH*SQH 176
VHQ+E+ AER H
Sbjct: 225 VHQDESIAERASKPH 181
>gb|CN815812.1|CN815812 HRO4510_G05_M10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G05_M10, mRNA sequence
Length = 322
Score = 20.4 bits (39), Expect(2) = 9.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +2 / -3
Query: 359 KHQTWHALSCHQRSCSW 409
KH+ SC +CSW
Sbjct: 104 KHRQVQLNSCRGCTCSW 54
Score = 19.5 bits (37), Expect(2) = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 132 VHQEEAEAERH*SQH 176
VHQ+E+ AER H
Sbjct: 226 VHQDESIAERASKPH 182
>gb|CN817004.1|CN817004 HRO4527_B11_D21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_B11_D21, mRNA sequence
Length = 324
Score = 20.4 bits (39), Expect(2) = 9.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +2 / -1
Query: 359 KHQTWHALSCHQRSCSW 409
KH+ SC +CSW
Sbjct: 87 KHRQVQLNSCRGCTCSW 37
Score = 19.5 bits (37), Expect(2) = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -2
Query: 132 VHQEEAEAERH*SQH 176
VHQ+E+ AER H
Sbjct: 209 VHQDESIAERASKPH 165
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.311 0.129 0.382
Matrix: BLOSUM62
Number of Hits to DB: 5,687,020
Number of Sequences: 8143
Number of extensions: 83225
Number of successful extensions: 1965
Number of sequences better than 10.0: 42
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 141211208
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 0 ( 0.0 bits)
S1: 42 (21.8 bits)