TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBJ23f06.xg.2.1
         (683 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820072.1|CN820072  HRO4410_G07_M14ZS5 Lib AA069E1X Aven...   172   6e-044

>gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_G07_M14, mRNA
           sequence
          Length = 798

 Score =  172 bits (370), Expect = 6e-044
 Identities = 65/92 (70%), Positives = 75/92 (81%)
 Frame = +1 / +2

                                                                       
Query: 406 KQTYYARFGTYLEHDIGHHTSGDHQXLLLAYVGIPRYEGPEVDPTIXTHDAKDLYKAGEX 585
           +QTYY++FGTYLEHDI + TSGDHQ +LLAY+GIPRYEGPEVDPTI THDAKDLYKAGE 
Sbjct: 11  RQTYYSKFGTYLEHDISYQTSGDHQKILLAYLGIPRYEGPEVDPTIVTHDAKDLYKAGEK 190

                                           
Query: 586 RLGTDEXXXXXXFTXRXWAHXASXSSAXHHMY 681
           + GTDE      FT R WAH A+ +SA HHM+
Sbjct: 191 KFGTDEKTFIRIFTERSWAHMAAVASAYHHMF 286




 Score =  105 bits (224), Expect = 8e-024
 Identities = 46/79 (58%), Positives = 53/79 (67%)
 Frame = -3 / -3

                                                                       
Query: 678 HMMVXRRXRCXVCPAAXSEXAXXXXLIRTEPXLTSFVQILCIMCXNGRINLRTFVAWNPH 499
           H++V R   C VCPAA SE      LI  E  LTSFVQ+LCIMC    INLR F+AWN  
Sbjct: 283 HVVVSRSNSCHVCPAAFSEDTDEGFLICAELLLTSFVQVLCIMCHYSGINLRPFIAWNAE 104

                              
Query: 498 IGK*KLLVIARCVVTNVML 442
           IG * LL+IA C++TNVML
Sbjct: 103 IG**DLLMIAACLITNVML 47




 Score = 97.7 bits (207), Expect = 2e-021
 Identities = 52/90 (57%), Positives = 57/90 (63%)
 Frame = -1 / -1

                                                                       
Query: 671 WXADXXDAXCAQXRXVXXXXXXXXXXXXXXXPALYKSFASCVXMVGSTSGPS*RGIPT*A 492
           W A+   A CAQ R V               PALY+SFASCV +VGSTSGPS*RG+P *A
Sbjct: 276 W*AEATAAMCAQLRSVKIRMKVFSSVPNFFSPALYRSFASCVTIVGSTSGPS*RGMPR*A 97

                                         
Query: 491 SKSXW*SPDVW*PMSCSR*VPNLA**VCFI 402
           SK   *SP V * MSCSR*VPNL * VC +
Sbjct: 96  SKIF**SPLV**LMSCSR*VPNLE*YVCLV 7




 Score = 97.3 bits (206), Expect = 2e-021
 Identities = 47/92 (51%), Positives = 54/92 (58%)
 Frame = -2 / -2

                                                                       
Query: 679 TYDGXQTXQMPXVPSXVQ*XRXXXXXHPYRAFXHQLCTNPLHHVSQW*DQPQDLRSVESP 500
           T  G Q  Q+P VPS VQ*       H  R   HQLCT PLHHVS   DQPQ L SVE  
Sbjct: 284 TCGGKQKQQLPCVPSCVQ*RYG*RFSHLCRTSSHQLCTGPLHHVSL*WDQPQALHSVECR 105

                                           
Query: 499 HRQVKAXGDRQMCGDQCHAQDKYQI*HNKSVS 404
            R V++  DR++  + CHAQDKYQ  +N S S
Sbjct: 104 DRLVRSSDDRRLFDN*CHAQDKYQTWNNMSAS 9



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,137,251
Number of Sequences: 8143
Number of extensions: 93126
Number of successful extensions: 790
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 226713985
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)