TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817080.1|CN817080 HRO4528_A05_B10ZS5 Lib AA071E1X Aven... 31 0.21
gb|CN814949.1|CN814949 HRO4504_C03_F06ZS5 Lib AA071E1X Aven... 31 0.28
gb|CN820659.1|CN820659 HRO4415_H10_P19ZS5 Lib AA069E1X Aven... 29 1.0
gb|CN820298.1|CN820298 HRO4417_G08_M15ZS5 Lib AA069E1X Aven... 28 1.9
gb|CN815826.1|CN815826 HRO4510_H07_O14ZS5 Lib AA071E1X Aven... 27 3.6
gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Aven... 27 3.6
gb|AY133230.1| Avena strigosa clone O10-3 pangrangja MITE e... 27 3.6
gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Aven... 27 4.9
gb|CN816488.1|CN816488 HRO4521_C11_E21ZS5 Lib AA071E1X Aven... 27 4.9
gb|CN817715.1|CN817715 HRO4461_F08_L15ZS5 Lib AA070E1X Aven... 27 4.9
gb|CN820665.1|CN820665 HRO4416_A05_B10ZS5 Lib AA069E1X Aven... 27 4.9
gb|CN818653.1|CN818653 HRO4467_E09_I17ZS5 Lib AA070E1X Aven... 26 6.8
gb|CN819362.1|CN819362 HRO4405_A09_A17ZS5 Lib AA069E1X Aven... 26 6.8
gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Aven... 26 6.8
emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllid... 26 6.8
gb|CN815649.1|CN815649 HRO4514_A03_A06ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN815794.1|CN815794 HRO4510_E11_I22ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN816069.1|CN816069 HRO4516_E11_J22ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN816473.1|CN816473 HRO4521_B07_C13ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN816912.1|CN816912 HRO4526_B08_C16ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN816999.1|CN816999 HRO4527_B06_D11ZS5 Lib AA071E1X Aven... 26 9.3
gb|CN817763.1|CN817763 HRO4453_F11_L20ZS5 Lib AA070E1X Aven... 26 9.3
gb|CN819112.1|CN819112 HRO4455_D02_G03ZS5 Lib AA070E1X Aven... 26 9.3
gb|CN819631.1|CN819631 HRO4402_D07_G14ZS5 Lib AA069E1X Aven... 26 9.3
gb|CN819965.1|CN819965 HRO4409_C08_E15ZS5 Lib AA069E1X Aven... 26 9.3
gb|CN820014.1|CN820014 HRO4410_A12_A24ZS5 Lib AA069E1X Aven... 26 9.3
gb|CN820104.1|CN820104 HRO4411_B06_D11ZS5 Lib AA069E1X Aven... 26 9.3
gb|CN820153.1|CN820153 HRO4411_G06_N11ZS5 Lib AA069E1X Aven... 26 9.3
gb|CN821164.1|CN821164 HRO4428_C01_F02ZS5 Lib AA069E1X Aven... 26 9.3
emb|AX180458.1| Sequence 36 from Patent WO0146391 26 9.3
>gb|CN817080.1|CN817080 HRO4528_A05_B10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A05_B10, mRNA sequence
Length = 868
Score = 31.3 bits (62), Expect = 0.21
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1 / -1
Query: 715 CGKRGCGYVYKITFSIETPWCSCQCALPRVC 807
CG Y+ TFS E+P+C C +C
Sbjct: 205 CGSSSVPCFYQATFSKESPYCRCAKLCSGIC 113
>gb|CN814949.1|CN814949 HRO4504_C03_F06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C03_F06, mRNA sequence
Length = 717
Score = 30.9 bits (61), Expect = 0.28
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1 / -1
Query: 160 RSGEGAKCEMRSGTRLRPARGTAEAE 83
R+GEG C +RSGTR P T E
Sbjct: 402 RAGEGCVCGVRSGTRATPLTLTLSPE 325
>gb|CN820659.1|CN820659 HRO4415_H10_P19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H10_P19, mRNA
sequence
Length = 710
Score = 29.0 bits (57), Expect = 1.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1 / +3
Query: 49 AESSVASSPSPLRPRQFRVPAGASSRF 129
+ SS SSP P RPR P+ SRF
Sbjct: 105 SRSSSTSSPPPSRPRSTAKPSPTISRF 185
>gb|CN820298.1|CN820298 HRO4417_G08_M15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_G08_M15, mRNA
sequence
Length = 364
Score = 28.1 bits (55), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1 / -2
Query: 58 SVASSPSPLRPRQFRVPAGASSR 126
+ + + SP R FR PAGASSR
Sbjct: 156 AASENQSPSRSFSFRQPAGASSR 88
>gb|CN815826.1|CN815826 HRO4510_H07_O14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H07_O14, mRNA sequence
Length = 540
Score = 27.2 bits (53), Expect = 3.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2 / -3
Query: 570 CLHVLVPSDVSS*TSVLLAIPAQLMQISSPLYVCTCFSKQAARLSALLTSHLTNIED 400
CL LV + ++ LLA L+Q+ L + T F +AA + ++ + I D
Sbjct: 217 CLRELVATHITLLAKNLLAFVQSLVQVCDGLLIWTLFLGKAAFVHTVVYGIVDQIVD 47
>gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C08_E15, mRNA
sequence
Length = 708
Score = 27.2 bits (53), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1 / +1
Query: 70 SPSPLRPRQFRVPAGASSRFASRTSRLRRC 159
SPSP R P+ +S+R + TS R C
Sbjct: 199 SPSPPSSSSSRTPSRSSTRSSRSTSTARSC 288
>gb|AY133230.1| Avena strigosa clone O10-3 pangrangja MITE element, partial
sequence
Length = 577
Score = 27.2 bits (53), Expect = 3.6
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +2 / +1
Query: 455 FEKHVQTYNGLDICINCAGIANKTLVYDDTSDGTRTWRH 571
F K N + NC A T ++ +R+WRH
Sbjct: 397 FSKETYNKNSIGTRTNCPK*ARSTTTVQASTINSRSWRH 513
>gb|CN814661.1|CN814661 HRO4501_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_B06_C11, mRNA sequence
Length = 842
Score = 26.7 bits (52), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2 / +2
Query: 167 QQLLDRSTHPCAGEMELKPGMSALVTGGASG 259
++ + R H A ++ELKPGM L G G
Sbjct: 170 RESIKRHEHFLALQLELKPGMKVLDVGCGIG 262
>gb|CN816488.1|CN816488 HRO4521_C11_E21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C11_E21, mRNA sequence
Length = 680
Score = 26.7 bits (52), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1 / -2
Query: 49 AESSVASSPSPLRPRQFRVPAGASSRFASRTSRL 150
A + S S LRP ++ + G S+F ++ SRL
Sbjct: 628 APKKLLPSDSRLRPDRYALEKGDMSKFGAQKSRL 527
>gb|CN817715.1|CN817715 HRO4461_F08_L15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4461_F08_L15, mRNA
sequence
Length = 285
Score = 26.7 bits (52), Expect = 4.9
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 67 SSPSPLRPRQ 96
SSPSPLRPRQ
Sbjct: 15 SSPSPLRPRQ 44
>gb|CN820665.1|CN820665 HRO4416_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A05_B10, mRNA
sequence
Length = 442
Score = 26.7 bits (52), Expect = 4.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 44 PAPKAPWPR 70
PAP APWPR
Sbjct: 166 PAPSAPWPR 140
>gb|CN818653.1|CN818653 HRO4467_E09_I17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_E09_I17, mRNA sequence
Length = 646
Score = 26.3 bits (51), Expect = 6.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1 / -3
Query: 745 KITFSIETPWCSC 783
K+ F E PWCSC
Sbjct: 374 KVPFLGEPPWCSC 336
>gb|CN819362.1|CN819362 HRO4405_A09_A17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_A09_A17, mRNA
sequence
Length = 336
Score = 26.3 bits (51), Expect = 6.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +1 / -1
Query: 616 CKSNNAKPKEARCHNKHW 669
CK NN +P R +++W
Sbjct: 141 CKCNNPRPPRTRAQSQNW 88
>gb|CN821560.1|CN821560 HRO4426_G01_M02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_G01_M02, mRNA
sequence
Length = 675
Score = 26.3 bits (51), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2 / +3
Query: 530 VYDDTSDGTRTWRHAVNVNL 589
++ T+DG TW +A+ VNL
Sbjct: 126 IFKLTNDGKPTWVNAITVNL 185
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
Length = 1146
Score = 26.3 bits (51), Expect = 6.8
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1 / +1
Query: 70 SPSPLRPRQFRVPAGASSRFASRTSRLRR 156
S SP P AG +R SRTS LRR
Sbjct: 793 SGSPASPSPACTGAGTRTRRPSRTSSLRR 879
>gb|CN815649.1|CN815649 HRO4514_A03_A06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A03_A06, mRNA sequence
Length = 727
Score = 25.8 bits (50), Expect = 9.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1 / -1
Query: 310 SHK*TPPCKSNTKCFPDAGGAAG 242
SHK P K + FP+A G G
Sbjct: 340 SHKPCPTVKERMRRFPEASGVLG 272
>gb|CN815794.1|CN815794 HRO4510_E11_I22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_E11_I22, mRNA sequence
Length = 336
Score = 25.8 bits (50), Expect = 9.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2 / -2
Query: 273 SAFPMPEAPPVTSADMPGLSSISPA 199
+AF MP+ PP++S+ G S+ P+
Sbjct: 113 TAFNMPKYPPISSSWSSGASAPLPS 39
>gb|CN816069.1|CN816069 HRO4516_E11_J22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_E11_J22, mRNA sequence
Length = 585
Score = 25.8 bits (50), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2 / -2
Query: 38 RRPAPKAPWPRLLPHFGLGSSACR 109
R PA +APWP S++CR
Sbjct: 77 RSPARRAPWPSR*HAASYASASCR 6
>gb|CN816473.1|CN816473 HRO4521_B07_C13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_B07_C13, mRNA sequence
Length = 800
Score = 25.8 bits (50), Expect = 9.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1 / -3
Query: 43 TGAESSVASSPSPLRPRQFRVPAGASSRFAS 135
TGA S+ SS P R PAGA +R S
Sbjct: 702 TGAGSANESSGHPTAARSRGFPAGAPARCGS 610
>gb|CN816912.1|CN816912 HRO4526_B08_C16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B08_C16, mRNA sequence
Length = 346
Score = 25.8 bits (50), Expect = 9.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 481 IVCLYMLLKTSSKIIC 434
I+CL LL+ SS+++C
Sbjct: 161 IICLGFLLRQSSQVVC 208
>gb|CN816999.1|CN816999 HRO4527_B06_D11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_B06_D11, mRNA sequence
Length = 729
Score = 25.8 bits (50), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2 / +1
Query: 650 GVIINIGSAAGLYPMFLDPVYSAAKGGVVMFTRSLS 757
G+IINI + + SAAK GV TR+L+
Sbjct: 136 GLIINISATLHYTASWYQIHVSAAKAGVDSITRTLA 243
>gb|CN817763.1|CN817763 HRO4453_F11_L20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_F11_L20, mRNA sequence
Length = 824
Score = 25.8 bits (50), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2 / +2
Query: 395 IPSSIFVKCDVSNADNLAACFEKHVQTYNG 484
+P + +KC+ +N+ A C KH Q G
Sbjct: 323 VPFA*ALKCNGANSTRQALCCSKHQQKKRG 412
>gb|CN819112.1|CN819112 HRO4455_D02_G03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D02_G03, mRNA sequence
Length = 729
Score = 25.8 bits (50), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2 / +3
Query: 395 IPSSIFVKCDVSNADNLAACFEKHVQTYNG 484
+P + +KC+ +N+ A C KH Q G
Sbjct: 279 VPFA*ALKCNGANSTRQALCCSKHQQKKRG 368
>gb|CN819631.1|CN819631 HRO4402_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D07_G14, mRNA
sequence
Length = 541
Score = 25.8 bits (50), Expect = 9.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2 / +1
Query: 710 YSAAKGGVVMFTRSLS 757
YSAAK GV+ FT++++
Sbjct: 73 YSAAKAGVIGFTKTVA 120
>gb|CN819965.1|CN819965 HRO4409_C08_E15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_C08_E15, mRNA
sequence
Length = 831
Score = 25.8 bits (50), Expect = 9.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1 / +3
Query: 652 CHNKHWFSGRSLSY 693
CH+K W GR SY
Sbjct: 360 CHHKQWTKGRCNSY 401
>gb|CN820014.1|CN820014 HRO4410_A12_A24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_A12_A24, mRNA
sequence
Length = 513
Score = 25.8 bits (50), Expect = 9.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2 / +1
Query: 297 PLLAKAIQSAFPMPEAPPVTSADMPGLSSISPAQGWV 187
PLL + + S E S + GLSSIS G+V
Sbjct: 319 PLL*RVVGSVLASTEPETCCSCENSGLSSISMCFGFV 429
>gb|CN820104.1|CN820104 HRO4411_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_B06_D11, mRNA
sequence
Length = 600
Score = 25.8 bits (50), Expect = 9.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2 / +2
Query: 297 PLLAKAIQSAFPMPEAPPVTSADMPGLSSISPAQGWV 187
PLL + + S E S + GLSSIS G+V
Sbjct: 407 PLL*RVVGSVLASTEPETCCSCENSGLSSISMCFGFV 517
>gb|CN820153.1|CN820153 HRO4411_G06_N11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_G06_N11, mRNA
sequence
Length = 727
Score = 25.8 bits (50), Expect = 9.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1 / +3
Query: 652 CHNKHWFSGRSLSY 693
CH+K W GR SY
Sbjct: 267 CHHKQWTKGRCNSY 308
>gb|CN821164.1|CN821164 HRO4428_C01_F02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C01_F02, mRNA
sequence
Length = 665
Score = 25.8 bits (50), Expect = 9.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2 / -1
Query: 570 CLHVLVPSDVSS*TSVLLAIPAQLMQISSPLYVCTCFSKQAARLSALLTSHLTNIED 400
CL LV + ++ LLA L+ + L V T F +AA + A++ + I D
Sbjct: 302 CLRELVAAHITLLAKNLLAFVQSLV*VCDGLLVWTLFLGEAAFVHAVVYGIVDQIVD 132
>emb|AX180458.1| Sequence 36 from Patent WO0146391
Length = 7340
Score = 25.8 bits (50), Expect = 9.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1 / +1
Query: 478 VCLYMLLKTSSKIICITNITLNK 410
VC Y+LL ++CI++ + K
Sbjct: 325 VCFYLLLHIVQSLLCISSTAVRK 393
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,092,928
Number of Sequences: 8143
Number of extensions: 103257
Number of successful extensions: 845
Number of sequences better than 10.0: 30
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 273901050
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)