TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 166 8e-042
gb|CN820249.1|CN820249 HRO4417_C01_E01ZS5 Lib AA069E1X Aven... 66 1e-023
gb|CN818591.1|CN818591 HRO4454_H08_P16ZS5 Lib AA070E1X Aven... 56 2e-008
gb|AI978275.1|AI978275 CDO54.R Oat Etiolated Leaf cDNA Libr... 36 0.023
gb|CN814905.1|CN814905 HRO4503_G07_N13ZS5 Lib AA071E1X Aven... 35 0.060
gb|CN815971.1|CN815971 HRO4515_E02_J03ZS5 Lib AA071E1X Aven... 33 0.22
gb|CN817161.1|CN817161 HRO4528_H08_P16ZS5 Lib AA071E1X Aven... 32 0.30
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 31 0.56
gb|CN816894.1|CN816894 HRO4526_A02_A04ZS5 Lib AA071E1X Aven... 30 1.1
gb|CN817723.1|CN817723 HRO4461_E08_J15ZS5 Lib AA070E1X Aven... 30 1.4
gb|CN820609.1|CN820609 HRO4415_D07_H13ZS5 Lib AA069E1X Aven... 30 1.4
gb|CN821132.1|CN821132 HRO4427_H03_P05ZS5 Lib AA069E1X Aven... 30 1.4
gb|CN821369.1|CN821369 HRO4424_E09_J18ZS5 Lib AA069E1X Aven... 30 1.4
gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Aven... 29 2.0
gb|CN819095.1|CN819095 HRO4468_H10_O20ZS5 Lib AA070E1X Aven... 29 2.0
gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks o... 29 2.0
gb|CN815286.1|CN815286 HRO4508_A05_B10ZS5 Lib AA071E1X Aven... 29 2.7
gb|CN818179.1|CN818179 HRO4471_B01_C01ZS5 Lib AA070E1X Aven... 29 2.7
gb|CN821480.1|CN821480 HRO4425_G10_M19ZS5 Lib AA069E1X Aven... 29 2.7
gb|BE439349.1|BE439349 CDO1449_WHE05F06R ITEC CDO Oat cDNA ... 29 3.8
gb|CN815624.1|CN815624 HRO4513_G02_M03ZS5 Lib AA071E1X Aven... 29 3.8
gb|CN816068.1|CN816068 HRO4516_E10_J20ZS5 Lib AA071E1X Aven... 29 3.8
gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, com... 29 3.8
gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Aven... 28 5.2
gb|CN815770.1|CN815770 HRO4510_C10_E20ZS5 Lib AA071E1X Aven... 28 5.2
gb|CN816154.1|CN816154 HRO4517_E12_I23ZS5 Lib AA071E1X Aven... 28 5.2
gb|CN816222.1|CN816222 HRO4518_C10_E20ZS5 Lib AA071E1X Aven... 28 5.2
gb|CN816239.1|CN816239 HRO4518_E03_I06ZS5 Lib AA071E1X Aven... 28 5.2
gb|CN818127.1|CN818127 HRO4471_F08_K15ZS5 Lib AA070E1X Aven... 28 5.2
gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Aven... 28 5.2
gb|CN818318.1|CN818318 HRO4469_H10_P19ZS5 Lib AA070E1X Aven... 28 5.2
gb|CN818587.1|CN818587 HRO4467_A10_A19ZS5 Lib AA070E1X Aven... 28 5.2
gb|CN819323.1|CN819323 HRO4452_F04_K08ZS5 Lib AA070E1X Aven... 28 5.2
gb|CN820861.1|CN820861 HRO4420_G09_N18ZS5 Lib AA069E1X Aven... 28 5.2
gb|AY038003.1| Avena sativa isolate Pc68LrkB1 sequence cont... 28 5.2
gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN815033.1|CN815033 HRO4505_B05_C09ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN815443.1|CN815443 HRO4509_G03_M05ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN816438.1|CN816438 HRO4520_G03_N06ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN818697.1|CN818697 HRO4457_F05_L09ZS5 Lib AA070E1X Aven... 28 7.1
gb|CN821342.1|CN821342 HRO4424_C02_F04ZS5 Lib AA069E1X Aven... 28 7.1
emb|X56802.1|ASSPE1 Oat spe1 mRNA for arginine decarboxylas... 28 7.1
emb|AX081749.1| Sequence 4 from Patent WO0109358 28 7.1
dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthran... 28 7.1
gb|CN814857.1|CN814857 HRO4503_C04_F07ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN814948.1|CN814948 HRO4504_C02_F04ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN816899.1|CN816899 HRO4526_A07_A14ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN820892.1|CN820892 HRO4421_B06_C11ZS5 Lib AA069E1X Aven... 27 9.7
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 166 bits (358), Expect = 8e-042
Identities = 62/103 (60%), Positives = 83/103 (80%)
Frame = +3 / +2
Query: 291 LRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFA 470
L+KG W+ ED L++++ KHG G W++V K GL RCGKSCRLRW N+LRP+LK+GAF
Sbjct: 383 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 562
Query: 471 QDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKK 599
+EE LII+LH+ +GN+W+++AA LPGRTDNEIKN WN+ IK+
Sbjct: 563 PEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691
Score = 76.7 bits (161), Expect = 1e-014
Identities = 38/97 (39%), Positives = 55/97 (56%)
Frame = -2 / -1
Query: 596 LDARVP*ILDLIISPPWQLRCNLRPPVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQP 417
L + +P IL IIS WQ+ + RP V V+LDDE + GE P LEV P++V P +
Sbjct: 688 LYSSIPVILYFIISTSWQISSHPRPLVSHLGVELDDEPLLLGGEGPLLEVGPEVVRPAEA 509
Query: 416 TTLSAPLKPSEFGNRAPAAMAMLCYVIHEFLILLRGP 306
L+A +P +R P +A+L V+H+ +L R P
Sbjct: 508 AALAAAEEPRVLLHRVPVPLAVLLDVVHQDGVLRRRP 398
Score = 63.8 bits (133), Expect = 9e-011
Identities = 36/80 (45%), Positives = 37/80 (46%)
Frame = -3 / -2
Query: 583 FHRFLISLSVLPGSCAAI*DHLFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFP 404
F F ISLSV PG AAI HLFP S AP LR GLR F QL P
Sbjct: 675 FQ*FFISLSVRPGKLAAILAHLFPILEWSWMMSLSSSGVKAPFLRLGLRWFAQRRRQLLP 496
Query: 403 HL*SPASLGTELQQPWPCFV 344
SP T Q P PCF+
Sbjct: 495 QRKSPVFFCTAFQFPSPCFL 436
>gb|CN820249.1|CN820249 HRO4417_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C01_E01, mRNA
sequence
Length = 422
Score = 65.7 bits (137), Expect(3) = 1e-023
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -1 / -2
Query: 1797 KHQFSRERKGDSRTYFPMHPAATSNARAVLSLILPALQLRNSCGG*FLYQ 1648
K QFSRERKGDSR YF +H AT+ R V S+ + SCGG*FLYQ
Sbjct: 331 KQQFSRERKGDSRMYFSVHFDATTEDRTVFSMDTASSSADESCGG*FLYQ 182
Score = 55.6 bits (115), Expect(3) = 3e-018
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1 / +3
Query: 1480 HQTCMTRTCKECNYLLRISRHYVPP 1554
HQTCMT+TCKEC LL ISR+YVPP
Sbjct: 6 HQTCMTKTCKECPCLLSISRYYVPP 80
Score = 52.4 bits (108), Expect(3) = 1e-023
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = -1 / -1
Query: 1608 HESLKIRVSASSDLLCSMWWNIMPRYSQKIVAFFASPCHTCLVL 1477
HES+ +++ LL W NI+PRY+QK AFFAS CHT L+L
Sbjct: 134 HESVSQVSASADLLLFHEWRNIVPRYAQKTRAFFASLCHTSLML 3
Score = 47.3 bits (97), Expect(2) = 3e-014
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +1 / +2
Query: 1648 LIQKSSSTAVPQLKSWQYQGKDSPGIRSCSRMHRKVCSRVSFPFS*KLMFS 1800
LIQKS+S + GKDS + S +MHRKV S VS FS*KL+FS
Sbjct: 182 LIQKSTSATFIS*R*CSVHGKDSSILSSGIKMHRKVHSGVSLSFS*KLLFS 334
Score = 46.9 bits (96), Expect(2) = 3e-013
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = -2 / -3
Query: 1802 KENINFQEKGKETLEHTFLCILLQLLMPGLSFP 1704
+EN NF EK +ET E TFLCIL+ LL LSFP
Sbjct: 336 EENNNFHEKERETPECTFLCILMPLLRIELSFP 238
Score = 46.9 bits (96), Expect(2) = 3e-014
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +3 / +2
Query: 1479 APDMYDKDLQRMQLSFENI*ALCSTTWNRADQKKQKLVFSEIR 1607
A D+YDKDLQRM LSFE+I* LCS +++ S+IR
Sbjct: 5 ASDLYDKDLQRMPLSFEHI*VLCSAIHGTRVDQQKLRPGSQIR 133
Score = 46.4 bits (95), Expect(3) = 3e-018
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2 / +3
Query: 1706 ERTALALEVAAGCIGKYVLESPFLSLEN*CF 1798
E+T L+ VA+ C KY+LESPFLS EN CF
Sbjct: 240 EKTVLSSVVASKCTEKYILESPFLSRENCCF 332
Score = 44.1 bits (90), Expect(2) = 3e-013
Identities = 26/45 (57%), Positives = 28/45 (62%)
Frame = -2 / -2
Query: 1613 LPTNL*KYEFLLLLICSVPCGGT*CLDILKR*LHSLQVLVIHVWC 1479
L TNL* LLL+ GGT* LD+LKR HSLQV VI V C
Sbjct: 139 LLTNL*ARSQLLLIYSCSMNGGT*YLDMLKRQGHSLQVFVIQV*C 5
Score = 39.1 bits (79), Expect(2) = 0.001
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / +1
Query: 1478 STRHV*QGLAKNATIF*EYLGIMFHH 1555
S R V*Q LAKNA +F* YLG MF H
Sbjct: 4 SIRLV*QRLAKNALVF*AYLGTMFRH 81
Score = 38.2 bits (77), Expect(2) = 3e-006
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -3 / -3
Query: 1555 VVEHNA*IFSKDSCILCKSLSYMSGA 1478
+ EH+ *I SKD ILCKSLSY S A
Sbjct: 81 MAEHST*ICSKDKGILCKSLSYKSDA 4
Score = 31.8 bits (63), Expect(2) = 3e-006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3 / -1
Query: 1804 RRKTSIFKRKERRL*NILSYASCCNF*CQGCPF 1706
++KT+IF RK+ RL N+L A C++* C F
Sbjct: 338 QKKTTIFTRKKGRLQNVLFCAF*CHY*G*NCLF 240
Score = 25.4 bits (49), Expect(3) = 1e-023
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2 / -1
Query: 1886 FLPMAIYIYLISTRENKNSNMQKFSRVQKENINFQEK 1776
FLPM +Y++ + +S + RVQK+ F K
Sbjct: 419 FLPMPVYLFDKQSVNQDSSIQKLGCRVQKKTTIFTRK 309
Score = 23.1 bits (44), Expect(3) = 3e-018
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 1640 TLS*YRNHPPQL 1675
++ *YRN PPQL
Sbjct: 174 SVG*YRNQPPQL 209
Score = 21.7 bits (41), Expect(2) = 0.001
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / +3
Query: 1706 ERTALALEVAAGCIGKYV 1759
E+T L+ VA+ C KY+
Sbjct: 240 EKTVLSSVVASKCTEKYI 293
>gb|CN818591.1|CN818591 HRO4454_H08_P16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_H08_P16, mRNA sequence
Length = 502
Score = 56.1 bits (116), Expect = 2e-008
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3 / +1
Query: 465 FAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 581
F + EEDL+ +H ++GNRW IA ++PGRT E++ W
Sbjct: 202 FTEAEEDLVFRMHRLVGNRWELIAGRIPGRTAKEVEMFW 318
Score = 29.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3 / -3
Query: 565 SLSVLPGSCAAI*DHLFPRTAC 500
S +VLPG AI HLFP + C
Sbjct: 302 SFAVLPGILPAISSHLFPTSLC 237
>gb|AI978275.1|AI978275 CDO54.R Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO54, mRNA sequence
Length = 374
Score = 35.9 bits (72), Expect = 0.023
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3 / +1
Query: 255 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPK 383
E G+ ++ K W+ EE+E L + KHG G W ++ K
Sbjct: 19 EHGKGGEAWEMGAPKQKWTSEEEEALRRGVLKHGAGKWRTIQK 147
>gb|CN814905.1|CN814905 HRO4503_G07_N13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G07_N13, mRNA sequence
Length = 286
Score = 34.5 bits (69), Expect = 0.060
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3 / +1
Query: 207 CKLCEFGWSSQVLHCVEMGRHSCC 278
C LC FGW S+V CV + H C
Sbjct: 139 CNLCRFGWKSKVQTCV*LVLHVWC 210
>gb|CN815971.1|CN815971 HRO4515_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_E02_J03, mRNA sequence
Length = 619
Score = 32.7 bits (65), Expect = 0.22
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1 / -1
Query: 360 HGHALLCDS*VSHPPQGTRAPFSASACSSKNASPSQRNAEPGSSNQTHR 214
HG L S V PQ T APFS+ S + +++ + S N +HR
Sbjct: 442 HGGVLASASDVKDLPQLTNAPFSSETHSR*KSPRKEKHRKTISENNSHR 296
>gb|CN817161.1|CN817161 HRO4528_H08_P16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_H08_P16, mRNA sequence
Length = 482
Score = 32.2 bits (64), Expect = 0.30
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1 / +1
Query: 327 SHPPQGTRAPFSASACSSKNASPSQRNAEPGS 232
S PP G RA S+S CS+ + S S+ + P S
Sbjct: 67 SRPPAGRRATSSSSPCSAPSRSSSRPSPGPSS 162
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 31.3 bits (62), Expect = 0.56
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +1 / +2
Query: 688 REPQGPATSTHQALVLWGT*APSSARRLNHQC*CPCTTRIVLKHQTWHALSCHQRSCS 861
R + P H + + GT S + HQ CT ++ K Q C+ RSC+
Sbjct: 500 RPRENPGVKIHSMIRITGTKMAYSFQPSTHQVSLKCTCKLNDKWQLHLCFVCYLRSCN 673
>gb|CN816894.1|CN816894 HRO4526_A02_A04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A02_A04, mRNA sequence
Length = 629
Score = 30.4 bits (60), Expect = 1.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3 / +1
Query: 360 GCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIEL 500
GC SS P+ + C +S +L + L+ K+G+ A + +D ++L
Sbjct: 148 GCDSSFPETKLGEHCSESLQLHLLKVLQAIHKKGSTADELKDRALQL 288
>gb|CN817723.1|CN817723 HRO4461_E08_J15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E08_J15, mRNA sequence
Length = 593
Score = 29.9 bits (59), Expect = 1.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1 / +3
Query: 321 PPQGTRAPFSASACSSKNASPSQRNAEPGSSNQT 220
PP RAP S+S+ + + SPS + P + + T
Sbjct: 90 PPSCARAPTSSSSPARSSVSPSATGSAPSTRSHT 191
>gb|CN820609.1|CN820609 HRO4415_D07_H13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_D07_H13, mRNA
sequence
Length = 515
Score = 29.9 bits (59), Expect = 1.4
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -1 / +2
Query: 1557 MWWNIMPRYSQKIV 1516
+WWN+MPR+S+ ++
Sbjct: 77 LWWNLMPRHSRSLL 118
>gb|CN821132.1|CN821132 HRO4427_H03_P05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_H03_P05, mRNA
sequence
Length = 430
Score = 29.9 bits (59), Expect = 1.4
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -1 / +3
Query: 1557 MWWNIMPRYSQKIV 1516
+WWN+MPR+S+ ++
Sbjct: 21 LWWNLMPRHSRSLL 62
>gb|CN821369.1|CN821369 HRO4424_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_E09_J18, mRNA
sequence
Length = 526
Score = 29.9 bits (59), Expect = 1.4
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -1 / +3
Query: 1557 MWWNIMPRYSQKIV 1516
+WWN+MPR+S+ ++
Sbjct: 135 LWWNLMPRHSRSLL 176
>gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C09_E18, mRNA sequence
Length = 476
Score = 29.5 bits (58), Expect = 2.0
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +3 / +1
Query: 966 GSSDGANMNSLWFNQSDFNCSTISTVMPPVSPSALSTSMGLNLPPDNPRHGGTG 1127
GS A S W +C+T +S SA LPP H TG
Sbjct: 124 GSPTSARPRSFWTGSPRSSCATAWCSWKTISESAWQCPRRPKLPPSLLAHSNTG 285
>gb|CN819095.1|CN819095 HRO4468_H10_O20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_H10_O20, mRNA sequence
Length = 737
Score = 29.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3 / +1
Query: 552 RTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADHGGAAPTIST 686
RT NLW S ++ G+ H P T D G A PT ST
Sbjct: 379 RTTRTPCNLW*SRLRL*TAWSGLICYLHSPATGFDWGYAKPTTST 513
>gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks old, post-germination Avena
sativa cDNA clone ASCID1-1_016_f08, mRNA sequence
Length = 592
Score = 29.5 bits (58), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 327 SHPPQGTRAPFSASACSSKNASPSQRNAEPGSSNQ 223
S PP+ RAP + C+S A+PS + +S +
Sbjct: 150 SRPPRPRRAPTTTPRCASAAAAPSSTSPRTRASTR 254
>gb|CN815286.1|CN815286 HRO4508_A05_B10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A05_B10, mRNA sequence
Length = 641
Score = 29.0 bits (57), Expect = 2.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3 / -1
Query: 613 FCLSFFLMHEFHRFLISLSVLPGSCAAI*DHLFPRT 506
F ++ F+ HR IS S+ P S I +FPR+
Sbjct: 236 FPINHFVRRHSHRIFISSSISPYSIILIFSPIFPRS 129
>gb|CN818179.1|CN818179 HRO4471_B01_C01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_B01_C01, mRNA sequence
Length = 657
Score = 29.0 bits (57), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3 / +1
Query: 1051 GGITVEIVLQLKSLWLNQSEFIF 983
G + +E+ L S+WLNQ +IF
Sbjct: 217 GAVFIELFFILTSIWLNQFYYIF 285
>gb|CN821480.1|CN821480 HRO4425_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_G10_M19, mRNA
sequence
Length = 775
Score = 29.0 bits (57), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3 / +3
Query: 1051 GGITVEIVLQLKSLWLNQSEFIF 983
G + +E+ L S+WLNQ +IF
Sbjct: 204 GAVFIELFFILTSIWLNQFYYIF 272
>gb|BE439349.1|BE439349 CDO1449_WHE05F06R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1449_WHE05, mRNA sequence
Length = 301
Score = 28.6 bits (56), Expect = 3.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1 / +3
Query: 670 LPPSAPREPQGPATSTHQALVLWGT*AP 753
LPP P P A A V WG *AP
Sbjct: 195 LPPQGPGSPVPCAAHQQDAFVRWG**AP 278
>gb|CN815624.1|CN815624 HRO4513_G02_M03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G02_M03, mRNA sequence
Length = 667
Score = 28.6 bits (56), Expect = 3.8
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +3 / -3
Query: 663 GAAPTISTERTSGSSDINPSSTGPLGNLSPLLSETAQSSMLMPVYDKNRAETPNLARP 836
G + +S ++ S D++P ++ ++ PL +E ++ ++ + + TPN +RP
Sbjct: 329 GTSGHVSVMNSTTSYDMSPCTSICSFSVGPLTTEAPVANFFPSFFEASLSFTPNNSRP 156
>gb|CN816068.1|CN816068 HRO4516_E10_J20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_E10_J20, mRNA sequence
Length = 639
Score = 28.6 bits (56), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1 / +3
Query: 1572 DLLCSMWWNIMPRYSQKIVAFFASPC 1495
D+LC++ +M RY K+V FF+ C
Sbjct: 519 DVLCALCCLLMDRYRVKLVWFFSFIC 596
>gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, complete cds
Length = 1548
Score = 28.6 bits (56), Expect = 3.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1 / +2
Query: 279 SSKNASPSQRNAEPGSSNQTHRAYRSAECIIMHDDEHLLR*HRASSTM 136
SS A PS ++ P + + + S C R*HRASS++
Sbjct: 815 SSSGAQPSIASSRPSLCSNNNNSSSSLRCNNSSSSLRCNR*HRASSSL 958
>gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A05_B09, mRNA sequence
Length = 808
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 595 LMHEFHRFLISLSVL 551
L+HEF+ FLI+LS+L
Sbjct: 185 LLHEFYHFLITLSLL 141
>gb|CN815770.1|CN815770 HRO4510_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C10_E20, mRNA sequence
Length = 647
Score = 28.1 bits (55), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1 / -3
Query: 835 LSCHQRSCSWSSLLLDTRVHQPATHQAKL 921
+SCH R C+ +SL T PA + KL
Sbjct: 519 ISCHHRICTATSLAAKTLTFPPAHLRQKL 433
>gb|CN816154.1|CN816154 HRO4517_E12_I23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E12_I23, mRNA sequence
Length = 779
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3 / +2
Query: 184 ARRRTPSPVAQSFFDD 137
AR R+P+PV++SFF D
Sbjct: 53 ARFRSPTPVSKSFFSD 100
>gb|CN816222.1|CN816222 HRO4518_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C10_E20, mRNA sequence
Length = 785
Score = 28.1 bits (55), Expect = 5.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3 / +3
Query: 681 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 779
S E+ SSDI S PL LSPLL T S
Sbjct: 351 SNEKKITSSDIPLKSHTPLVYLSPLLEGTVMDS 449
>gb|CN816239.1|CN816239 HRO4518_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E03_I06, mRNA sequence
Length = 636
Score = 28.1 bits (55), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2 / -2
Query: 1904 ELPTHAFLPMAIYIYLISTRENKNSNMQKFSRVQKENINFQEKGK 1770
++ TH P I I + + ++ S +QKF KEN + GK
Sbjct: 491 QVRTHTHAPFPIKIII*TEAQSSFSFLQKFEDPGKENKDINTGGK 357
>gb|CN818127.1|CN818127 HRO4471_F08_K15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_F08_K15, mRNA sequence
Length = 824
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3 / +2
Query: 1908 TCK*PQTFNCCHACPCKLIIACCIFHFF 1991
+C P+ F CC C+L+ A FF
Sbjct: 677 SCYHPRAFTCCQVGTCRLLSAGLACFFF 760
>gb|CN818141.1|CN818141 HRO4471_D10_G19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D10_G19, mRNA sequence
Length = 791
Score = 28.1 bits (55), Expect = 5.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3 / +3
Query: 681 STERTSGSSDINPSSTGPLGNLSPLLSETAQSS 779
S E+ SSDI S PL LSPLL T S
Sbjct: 399 SNEKKITSSDIPLKSHTPLVYLSPLLEGTVMDS 497
>gb|CN818318.1|CN818318 HRO4469_H10_P19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_H10_P19, mRNA sequence
Length = 599
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3 / +2
Query: 1908 TCK*PQTFNCCHACPCKLIIACCIFHFF 1991
+C P+ F CC C+L+ A FF
Sbjct: 452 SCYHPRAFTCCQVGTCRLLSAGLACFFF 535
>gb|CN818587.1|CN818587 HRO4467_A10_A19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_A10_A19, mRNA sequence
Length = 685
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3 / +3
Query: 1908 TCK*PQTFNCCHACPCKLIIACCIFHFF 1991
+C P+ F CC C+L+ A FF
Sbjct: 555 SCYHPRAFTCCQVGTCRLLSAGLACFFF 638
>gb|CN819323.1|CN819323 HRO4452_F04_K08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_F04_K08, mRNA sequence
Length = 479
Score = 28.1 bits (55), Expect = 5.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3 / +2
Query: 1908 TCK*PQTFNCCHACPCKLIIACCIFHFF 1991
+C P+ F CC C+L+ A FF
Sbjct: 332 SCYHPRAFTCCQVGTCRLLSAGLACFFF 415
>gb|CN820861.1|CN820861 HRO4420_G09_N18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G09_N18, mRNA
sequence
Length = 652
Score = 28.1 bits (55), Expect = 5.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3 / -1
Query: 972 SDGANMNSLWFNQSDFNCSTISTVMPPVSPSALSTSMGLNL 1094
S A SL F + F STIS V PPV+ + G NL
Sbjct: 271 SAAATRFSLIFLRHAFLFSTISGVFPPVNSGKYFSFFGKNL 149
>gb|AY038003.1| Avena sativa isolate Pc68LrkB1 sequence containing transposon and
repetitive DNA linked to receptor kinase gene
Length = 3596
Score = 28.1 bits (55), Expect = 5.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3 / +3
Query: 210 KLCEFGWSSQVLHCVEMGRHSCCYKQKLRKGLWSP 314
KLC+ + QV+ C + H L GL+SP
Sbjct: 2847 KLCQNFFYKQVIFCFSIC*HHAMCSSNLSSGLYSP 2951
>gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E11_J21, mRNA sequence
Length = 736
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 829 HALSCHQRSC 858
HA+SCHQR C
Sbjct: 698 HAISCHQRQC 727
>gb|CN815033.1|CN815033 HRO4505_B05_C09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B05_C09, mRNA sequence
Length = 435
Score = 27.6 bits (54), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3 / -3
Query: 1650 DTEIILHSCSSVEELAISRKGQPW 1721
DT ++LHS SS + + + K Q W
Sbjct: 229 DTLLVLHSTSSKSKRSTTHKSQSW 158
>gb|CN815443.1|CN815443 HRO4509_G03_M05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G03_M05, mRNA sequence
Length = 482
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 34 ICSHAVAQSWPQMKPNH 84
+CS+++ SWP PNH
Sbjct: 207 LCSNSMRLSWPLQLPNH 257
>gb|CN816438.1|CN816438 HRO4520_G03_N06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_G03_N06, mRNA sequence
Length = 550
Score = 27.6 bits (54), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2 / -1
Query: 1121 SSMSRIIRWKIQPH*CREGRW*NWRHHCR 1035
S+ SR + WK P R+ R N HCR
Sbjct: 241 STRSRALSWKTAPPAHRQNRKLNGYRHCR 155
>gb|CN818697.1|CN818697 HRO4457_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_F05_L09, mRNA sequence
Length = 744
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 551 PWQLRCNLRPPVPEDSVQLDDEV 483
PWQ LR +PE + + +E+
Sbjct: 547 PWQATSRLRSAIPEGLIHIQEEI 479
>gb|CN821342.1|CN821342 HRO4424_C02_F04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C02_F04, mRNA
sequence
Length = 535
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1 / +1
Query: 34 ICSHAVAQSWPQMKPNH 84
+CS+++ SWP PNH
Sbjct: 190 LCSNSMRLSWPLQLPNH 240
>emb|X56802.1|ASSPE1 Oat spe1 mRNA for arginine decarboxylase (EC 4.1.1.19)
Length = 2124
Score = 27.6 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3 / -1
Query: 24 EISYLQPCSCSILASDEAQPFIGI 95
E S ++PCSCS++AS + GI
Sbjct: 1179 ERSRIRPCSCSVVASSSSSFGSGI 1108
>emb|AX081749.1| Sequence 4 from Patent WO0109358
Length = 2124
Score = 27.6 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3 / -1
Query: 24 EISYLQPCSCSILASDEAQPFIGI 95
E S ++PCSCS++AS + GI
Sbjct: 1179 ERSRIRPCSCSVVASSSSSFGSGI 1108
>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 2, complete cds
Length = 1770
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2 / -3
Query: 398 LKPSEFGNRAPAAMAMLCYVIH 333
L PS+ +R+P+A+++ C++ H
Sbjct: 1585 LHPSKL*SRSPSALSLSCFLFH 1520
>gb|CN814857.1|CN814857 HRO4503_C04_F07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_C04_F07, mRNA sequence
Length = 303
Score = 27.2 bits (53), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +1
Query: 1792 MFSFCTRLNFCIFEFLFSLV 1851
+FSFC L F F F+FS +
Sbjct: 97 LFSFCAELFFFFFFFVFSFL 156
>gb|CN814948.1|CN814948 HRO4504_C02_F04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C02_F04, mRNA sequence
Length = 631
Score = 27.2 bits (53), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2 / -2
Query: 560 ISPPWQLRCNLRPPVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPP 423
+ PP L+ + P+ + D + + CPS V P++ YPP
Sbjct: 396 LRPPCYLQGSHSFPLQHRCFRHDFLDYHPISGCPSQVVHPRLCYPP 259
>gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C02_F04, mRNA sequence
Length = 741
Score = 27.2 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1 / -3
Query: 324 HPPQGTRAPFSASACSSKNAS 262
HP + R+P+ +SAC S ++S
Sbjct: 148 HPAKPHRSPYMSSACRSSSSS 86
>gb|CN816899.1|CN816899 HRO4526_A07_A14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A07_A14, mRNA sequence
Length = 436
Score = 27.2 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1 / -2
Query: 324 HPPQGTRAPFSASACSSKNAS 262
HP + R+P+ +SAC S ++S
Sbjct: 204 HPAKPHRSPYMSSACRSSSSS 142
>gb|CN820892.1|CN820892 HRO4421_B06_C11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_B06_C11, mRNA
sequence
Length = 474
Score = 27.2 bits (53), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3 / +2
Query: 612 KGIDPNTHKPLTEADHGGAA 671
+G P H+PL EAD G +A
Sbjct: 170 QGAVPGVHRPLGEADQGPSA 229
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 24,928,231
Number of Sequences: 8143
Number of extensions: 383651
Number of successful extensions: 1788
Number of sequences better than 10.0: 52
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 742250136
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)