TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF36h01.yg.2.1
         (689 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821108.1|CN821108  HRO4427_F02_L03ZS5 Lib AA069E1X Aven...   157   2e-039

>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
           sequence
          Length = 714

 Score =  157 bits (337), Expect = 2e-039
 Identities = 60/65 (92%), Positives = 64/65 (98%)
 Frame = -2 / +2

                                                                       
Query: 196 LRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA 17
           LRTFHNQTDNVMCSYLPV+NSFNFTKGGLIQLNHGRPQPLQY VNAAFLASLY+DYL++A
Sbjct: 23  LRTFHNQTDNVMCSYLPVYNSFNFTKGGLIQLNHGRPQPLQYVVNAAFLASLYADYLDSA 202

                
Query: 16  DTPGW 2
           DTPGW
Sbjct: 203 DTPGW 217




 Score =  138 bits (295), Expect = 1e-033
 Identities = 57/65 (87%), Positives = 58/65 (89%)
 Frame = +3 / -1

                                                                       
Query: 3   HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
           HPGVSA SR*S YKEAR AALT Y*SG*G PWLSCINPP VKLNEL TGKYEHMTLSVWL
Sbjct: 216 HPGVSALSR*SAYKEARNAALTTY*SG*GRPWLSCINPPFVKLNELYTGKYEHMTLSVWL 37

                
Query: 183 WNVLS 197
           WNVL+
Sbjct: 36  WNVLN 22




 Score = 98.7 bits (209), Expect = 9e-022
 Identities = 40/60 (66%), Positives = 46/60 (76%)
 Frame = -1 / +1

                                                                       
Query: 206 RRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFPCFFIQRLS 27
           R+  +DIPQPN Q HVL+FT IQ IQLH+RRI+TAQPW AS  SV CQRS PC F+  LS
Sbjct: 13  RKKIKDIPQPN*QCHVLIFTSIQLIQLHERRIDTAQPWTASATSVCCQRSIPCLFVC*LS 192



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,776,475
Number of Sequences: 8143
Number of extensions: 89122
Number of successful extensions: 996
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 229164947
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)