TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF30a10.yg.2.1
(1130 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815880.1|CN815880 HRO4511_E05_J09ZS5 Lib AA071E1X Aven... 130 1e-054
gb|CN815656.1|CN815656 HRO4514_A12_A24ZS5 Lib AA071E1X Aven... 91 2e-052
gb|CN816079.1|CN816079 HRO4516_F12_L24ZS5 Lib AA071E1X Aven... 195 1e-050
gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Aven... 177 4e-045
emb|AJ629310.1| Avena strigosa partial s5.6 gene for recept... 93 5e-043
gb|CN814886.1|CN814886 HRO4503_E10_J19ZS5 Lib AA071E1X Aven... 125 9e-038
gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene ... 80 4e-037
gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene... 78 5e-037
gb|AY083679.1| Avena sativa clone OP10rc receptor kinase ge... 78 5e-037
gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Aven... 144 3e-035
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 78 1e-031
gb|AY038002.1| Avena sativa isolate Pc68LrkA receptor kinas... 62 8e-030
gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Aven... 78 1e-029
gb|CN820721.1|CN820721 HRO4416_H01_P02ZS5 Lib AA069E1X Aven... 79 5e-029
gb|CN821458.1|CN821458 HRO4425_E12_I23ZS5 Lib AA069E1X Aven... 116 7e-027
gb|CN817203.1|CN817203 HRO4458_E09_J18ZS5 Lib AA070E1X Aven... 61 6e-026
gb|CN817871.1|CN817871 HRO4462_E05_J10ZS5 Lib AA070E1X Aven... 111 3e-025
gb|CN814801.1|CN814801 HRO4502_F05_K10ZS5 Lib AA071E1X Aven... 109 8e-025
gb|CN815766.1|CN815766 HRO4510_C06_E12ZS5 Lib AA071E1X Aven... 68 1e-024
gb|CN816515.1|CN816515 HRO4521_F07_K13ZS5 Lib AA071E1X Aven... 48 2e-024
gb|AI978376.1|AI978376 CDO539.R Oat Etiolated Leaf cDNA Lib... 107 4e-024
gb|CN819044.1|CN819044 HRO4474_A04_B08ZS5 Lib AA070E1X Aven... 103 5e-024
gb|CN818925.1|CN818925 HRO4455_H03_O05ZS5 Lib AA070E1X Aven... 68 6e-022
gb|CN814872.1|CN814872 HRO4503_D07_H13ZS5 Lib AA071E1X Aven... 98 3e-021
gb|CN817085.1|CN817085 HRO4528_A11_B22ZS5 Lib AA071E1X Aven... 62 6e-021
gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Aven... 78 7e-021
>gb|CN815880.1|CN815880 HRO4511_E05_J09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E05_J09, mRNA sequence
Length = 818
Score = 130 bits (279), Expect(2) = 1e-054
Identities = 51/112 (45%), Positives = 77/112 (68%)
Frame = +3 / +2
Query: 549 NGRLNLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAK 728
N + L+W+TRY+I LG+ARGL+YLH+ I+H D+K N+L+DA+ PK++DFGLA
Sbjct: 359 NNSVVLSWNTRYQIALGVARGLSYLHQSCHECIIHCDVKPENILVDASFVPKVADFGLAA 538
Query: 729 LYDDKKTHVSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPN 884
+ + T GT GYL+PE+ +T K+D++ FG+V++EII+GR N
Sbjct: 539 FVGRDFSRILTTFRGTAGYLAPEWLSGVAITPKIDVYGFGMVLMEIISGRRN 694
Score = 98.7 bits (209), Expect(2) = 1e-054
Identities = 43/86 (50%), Positives = 57/86 (66%)
Frame = +3 / +2
Query: 288 SSANLLGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLF 467
S + LG GG+GSVYKG L D + + + QG+K+F AE+ +I +QH NLVKL
Sbjct: 92 SFSEKLGGGGFGSVYKGVLSDSKTTIAVKKLDGASQGEKQFRAEVSSIGLIQHINLVKLI 271
Query: 468 GFCLEGNKPLLVYEYMESGSLDKALF 545
GFC EG+ LLVYE+M +GSL+ LF
Sbjct: 272 GFCCEGDHRLLVYEHMLNGSLNSHLF 349
>gb|CN815656.1|CN815656 HRO4514_A12_A24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A12_A24, mRNA sequence
Length = 877
Score = 90.9 bits (192), Expect(4) = 2e-052
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +3 / +1
Query: 549 NGRLNLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAK 728
N ++ L+W R I +GIA GL YLH S +R++HRD+K N+LLD+ +N KISDFGLAK
Sbjct: 205 NRKVLLDWDRRLAIIVGIAEGLLYLHRHSRLRVIHRDLKPGNILLDSEMNAKISDFGLAK 384
Query: 729 LY 734
+Y
Sbjct: 385 IY 390
Score = 78.0 bits (164), Expect(4) = 2e-052
Identities = 32/66 (48%), Positives = 45/66 (68%)
Frame = +3 / +1
Query: 360 VAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKA 539
+A+K+L S QG EF E+E I+++QHRNLVKL G C +G + +LVYEY+ + SLD
Sbjct: 13 IAVKRLDSDSDQGFIEFKNEVELIAKLQHRNLVKLLGCCSQGEEKVLVYEYLPNKSLDDF 192
Query: 540 LFGNGR 557
+F R
Sbjct: 193 IFDENR 210
Score = 61.6 bits (128), Expect(4) = 2e-052
Identities = 22/41 (53%), Positives = 33/41 (80%)
Frame = +3 / +1
Query: 762 KVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPN 884
KV GT+GY++PEYA G + K D+F+FGV++LEI++G+ N
Sbjct: 424 KVVGTYGYMAPEYASHGLFSIKSDVFSFGVLVLEILSGKKN 546
Score = 27.6 bits (54), Expect(4) = 2e-052
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 918 LLXWVWQLYEEDHPLDIADPKL 983
LL + WQL+EE+ +++ D L
Sbjct: 574 LLGYAWQLFEEERWMELVDQAL 639
>gb|CN816079.1|CN816079 HRO4516_F12_L24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F12_L24, mRNA sequence
Length = 827
Score = 195 bits (420), Expect = 1e-050
Identities = 78/154 (50%), Positives = 105/154 (68%)
Frame = +3 / +2
Query: 468 GFCLEGNKPLLVYEYMESGSLDKALFGNGRLNLNWSTRYKICLGIARGLAYLHEESSIRI 647
G+C+ G K LLVYE++ + +L+ L G GR L W R +I LG A+GLAY+HE+ +I
Sbjct: 14 GYCISGGKRLLVYEFVTNNTLEFHLHGKGRPTLEWPIRLRIALGAAKGLAYIHEDCHPKI 193
Query: 648 VHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLSPEYAMRGHMTEK 827
+HRDIK+SN+LLD K++DFGLAK + THVST+V GTFGYL+PEYA G +TEK
Sbjct: 194 IHRDIKSSNILLDFKFEAKVADFGLAKFTSENNTHVSTRVMGTFGYLAPEYASSGKLTEK 373
Query: 828 VDIFAFGVVMLEIIAGRPNYDGKLDXXMAYLLXW 929
D+F+FGV++LE+I GR D L+ W
Sbjct: 374 SDVFSFGVMLLELITGRRPVDSNQTYMDDSLVDW 475
>gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_A08_A15, mRNA sequence
Length = 831
Score = 177 bits (380), Expect = 4e-045
Identities = 73/127 (57%), Positives = 94/127 (74%)
Frame = +3 / +3
Query: 624 HEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLSPEYA 803
HEES+IRIVHRDIKASN+LLD +N KISDFGLAKL +D TH+STKVAGT GY++PEYA
Sbjct: 12 HEESTIRIVHRDIKASNILLDKDMNAKISDFGLAKLNEDGHTHISTKVAGTIGYMAPEYA 191
Query: 804 MRGHMTEKVDIFAFGVVMLEIIAGRPNYDGKLDXXMAYLLXWVWQLYEEDHPLDIADPKL 983
MRG++T+K D+++FGVV LEI++G+ N + + YLL W L+E L++ DP L
Sbjct: 192 MRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEDFVYLLDWACVLHERGTLLELVDPDL 371
Query: 984 TXFDSXE 1004
S E
Sbjct: 372 GSNYSTE 392
>emb|AJ629310.1| Avena strigosa partial s5.6 gene for receptor-like-kinase
Length = 1410
Score = 92.7 bits (196), Expect(3) = 5e-043
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3 / -1
Query: 564 LNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDK 743
L+W TR +I LG ARGL+YLH+ +I+HRD+KA+N+LLD + DFGLAKL D K
Sbjct: 195 LDWDTRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYK 16
Query: 744 KTHVS 758
THV+
Sbjct: 15 DTHVT 1
Score = 67.0 bits (140), Expect(3) = 5e-043
Identities = 24/50 (48%), Positives = 38/50 (76%)
Frame = +3 / -3
Query: 249 YTYGELRTATENFSSANLLGEGGYGSVYKGKLVDGSVVAIKQLSETSRQG 398
++ EL+ A++NF++ N+LG GG+G VYKG+L DG++VA+K+L E G
Sbjct: 652 FSLRELQVASDNFNNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPG 503
Score = 55.1 bits (114), Expect(3) = 5e-043
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +3 / -3
Query: 381 ETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFG 548
E + G+ F E+E IS HRNL++L GFC+ + LLVY YM +GS+ L G
Sbjct: 517 ERTPGGEL*FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRG 350
>gb|CN814886.1|CN814886 HRO4503_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E10_J19, mRNA sequence
Length = 889
Score = 125 bits (267), Expect(2) = 9e-038
Identities = 49/104 (47%), Positives = 70/104 (67%)
Frame = +3 / +2
Query: 558 LNLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYD 737
L L+W +I + A L+YLH +SI I HRD+K+SN+LLD K+SDFG ++L
Sbjct: 128 LPLSWGDYLRIAMETAGALSYLHSSASISIFHRDVKSSNILLDGNYTAKVSDFGASRLVP 307
Query: 738 DKKTHVSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEII 869
+THV T V GTFGYL PEY ++EK D+++FGVV++E++
Sbjct: 308 MDQTHVDTNVQGTFGYLDPEYFHTRQLSEKSDVYSFGVVLVELL 439
Score = 47.3 bits (97), Expect(2) = 9e-038
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 447 RNLVKLFGFCLEGNKPLLVYEYMESGSLDKAL 542
+ VKLFG CLE PLLVY+Y+ SGSL + L
Sbjct: 11 QKFVKLFGCCLETEVPLLVYDYVSSGSLSEVL 106
>gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene cluster, complete
sequence
Length = 10607
Score = 80.3 bits (169), Expect(3) = 4e-037
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3 / -1
Query: 567 NWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKK 746
+W +I LGIARG+ YLH+ ++IVH DIK N+LLD PK++DFGLAKLY
Sbjct: 9677 SWDKLNEIALGIARGINYLHQGCEMQIVHFDIKPHNILLDGNFVPKVADFGLAKLYPKNN 9498
Query: 747 THVSTKV 767
+ V V
Sbjct: 9497 SFVPLSV 9477
Score = 76.2 bits (160), Expect(4) = 3e-036
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +3 / +3
Query: 588 ICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
I LGIARG+ YLH+ + RI+H DIK N+LLD NPKISDFGLAKL
Sbjct: 3225 IALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKL 3368
Score = 70.7 bits (148), Expect(3) = 4e-037
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +3 / -1
Query: 360 VAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKA 539
VA+K L S ++F++E+ TI R+ H N+V+L GFC + LVYEYM GSLDK
Sbjct: 9881 VAVKMLEGNSNCNGEDFISEVSTIGRIHHVNVVRLVGFCS*EMRRALVYEYMPQGSLDKY 9702
Query: 540 LF 545
+F
Sbjct: 9701 IF 9696
Score = 59.3 bits (123), Expect(4) = 3e-036
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 381 ETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALF 545
E S + F+ E+ TI + H N+V+L GFC EG + L+YE+M + SL+K +F
Sbjct: 3006 ENSTGEGEVFINEVATIGLIHHANIVRLVGFCSEGTRRALLYEFMPNDSLEKYIF 3170
Score = 43.7 bits (89), Expect(4) = 3e-036
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = +3 / +3
Query: 303 LGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGK 401
+G+GG+GSVYKG+L +G VA+K L ++ +G+
Sbjct: 2931 VGQGGFGSVYKGELPNGVPVAVKVLENSTGEGE 3029
Score = 37.3 bits (75), Expect(3) = 4e-037
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 303 LGEGGYGSVYKGKLVDGSV 359
LG+GGYGSVYKG L+ G V
Sbjct: 9941 LGQGGYGSVYKGVLLPGDV 9885
Score = 23.5 bits (45), Expect(4) = 3e-036
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 738 DKKTHVSTKVAGTFGYLSPEYAMR 809
D+ T GT GY++PE R
Sbjct: 3378 DRSIVTLTAARGTMGYIAPELYSR 3449
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete
sequence
Length = 13990
Score = 77.6 bits (163), Expect(3) = 5e-037
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = +3 / -2
Query: 561 NLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLY 734
+ +W +I LGIARG+ YLH+ ++I+H DIK N+LLD PK++DFGLAKLY
Sbjct: 1770 SFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDTNFVPKVADFGLAKLY 1597
Score = 76.2 bits (160), Expect(4) = 4e-035
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 588 ICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
I LGIARG+ YLH+ + RI+H DIK N+LLD NPKISDFGLAKL
Sbjct: 8690 IALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKL 8833
Score = 74.8 bits (157), Expect(3) = 5e-037
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +3 / -2
Query: 342 LVDGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMES 521
L G+ VA+K L S ++F++E+ T+ R+ H N+V+L GFC E + LVYEYM
Sbjct: 1986 LPGGAHVAVKMLEGNSSCNGEDFISEVSTLGRIHHVNVVRLVGFCSEELRRALVYEYMPH 1807
Query: 522 GSLDKALF 545
GSLDK +F
Sbjct: 1806 GSLDKYIF 1783
Score = 59.3 bits (123), Expect(4) = 4e-035
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 408 FVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFGN 551
F+ E+ TI + H N+V+L GFC EG + L+YE+M + SL+K +F +
Sbjct: 8498 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESLEKYIFSH 8641
Score = 40.5 bits (82), Expect(4) = 4e-035
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3 / +2
Query: 303 LGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGK 401
+G+GG+GSVYKG+L + VA+K L + +G+
Sbjct: 8396 VGQGGFGSVYKGELPNRVPVAVKMLENATGEGE 8494
Score = 35.4 bits (71), Expect(3) = 5e-037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3 / -2
Query: 303 LGEGGYGSVYKGKLVDG 353
LG+GGYGSVYKG L+ G
Sbjct: 2028 LGQGGYGSVYKGVLLPG 1978
Score = 23.1 bits (44), Expect(4) = 4e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +2
Query: 738 DKKTHVSTKVAGTFGYLSPEYAMR 809
D+ T GT GY++PE R
Sbjct: 8843 DQSIVTLTAARGTMGYIAPELYSR 8914
>gb|AY083679.1| Avena sativa clone OP10rc receptor kinase gene cluster, complete
sequence
Length = 12232
Score = 77.6 bits (163), Expect(3) = 5e-037
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = +3 / -2
Query: 561 NLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLY 734
+ +W +I LGIARG+ YLH+ ++I+H DIK N+LLD PK++DFGLAKLY
Sbjct: 1848 SFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDTNFVPKVADFGLAKLY 1675
Score = 76.2 bits (160), Expect(4) = 4e-035
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 588 ICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
I LGIARG+ YLH+ + RI+H DIK N+LLD NPKISDFGLAKL
Sbjct: 8765 IALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKL 8908
Score = 74.8 bits (157), Expect(3) = 5e-037
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +3 / -2
Query: 342 LVDGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMES 521
L G+ VA+K L S ++F++E+ T+ R+ H N+V+L GFC E + LVYEYM
Sbjct: 2064 LPGGAHVAVKMLEGNSSCNGEDFISEVSTLGRIHHVNVVRLVGFCSEELRRALVYEYMPH 1885
Query: 522 GSLDKALF 545
GSLDK +F
Sbjct: 1884 GSLDKYIF 1861
Score = 59.3 bits (123), Expect(4) = 4e-035
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +2
Query: 408 FVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFGN 551
F+ E+ TI + H N+V+L GFC EG + L+YE+M + SL+K +F +
Sbjct: 8573 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESLEKYIFSH 8716
Score = 40.5 bits (82), Expect(4) = 4e-035
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3 / +2
Query: 303 LGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGK 401
+G+GG+GSVYKG+L + VA+K L + +G+
Sbjct: 8471 VGQGGFGSVYKGELPNRVPVAVKMLENATGEGE 8569
Score = 35.4 bits (71), Expect(3) = 5e-037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3 / -2
Query: 303 LGEGGYGSVYKGKLVDG 353
LG+GGYGSVYKG L+ G
Sbjct: 2106 LGQGGYGSVYKGVLLPG 2056
Score = 23.1 bits (44), Expect(4) = 4e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +2
Query: 738 DKKTHVSTKVAGTFGYLSPEYAMR 809
D+ T GT GY++PE R
Sbjct: 8918 DQSIVTLTAARGTMGYIAPELYSR 8989
>gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C01_F02, mRNA sequence
Length = 537
Score = 144 bits (309), Expect = 3e-035
Identities = 55/116 (47%), Positives = 81/116 (69%)
Frame = +3 / +2
Query: 543 FGNGRLNLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGL 722
F G L+WS R ++ +G ARGL YLHE + +I+HRD+KA+NVLLD P + DFGL
Sbjct: 32 FKAGEPILDWSARKRVAIGTARGLEYLHEHCNPKIIHRDVKAANVLLDEYFEPVVGDFGL 211
Query: 723 AKLYDDKKTHVSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNYD 890
AKL D +KT V+T+V GT G+++PEY G +E+ D+F +G+++LE++ G+ D
Sbjct: 212 AKLVDVQKTSVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAID 379
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 78.0 bits (164), Expect(2) = 1e-031
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +3 / -3
Query: 561 NLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLY 734
+ +W +I LGIARG+ YLH+ ++I+H DIK N+LLD+ PK++DFGLAKLY
Sbjct: 5334 SFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAKLY 5161
Score = 76.2 bits (160), Expect(3) = 9e-029
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +3 / +3
Query: 588 ICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
I LGIARG+ YLH+ + RI+H DIK N+LLD NPKISDFGLAKL
Sbjct: 11076 IALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKL 11219
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 31/68 (45%), Positives = 43/68 (63%)
Frame = +3 / -3
Query: 342 LVDGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMES 521
L G +A+K L S ++F++E+ TI R+ H N+V+L GFC E + LVYEYM
Sbjct: 5550 LPGGVHIAVKLLEGNSSCNGEDFISEVSTIGRIHHVNVVRLVGFCAEEMRRALVYEYMPH 5371
Query: 522 GSLDKALF 545
GSLDK +F
Sbjct: 5370 GSLDKYIF 5347
Score = 60.6 bits (126), Expect(3) = 9e-029
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = +3 / +3
Query: 372 QLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFGN 551
++ E SR + F+ E+ I + H N+V+L GFC EG + L+YE+M + SL+K +F +
Sbjct: 10848 KMLENSRGEGEVFINEVAPIGLIHHANIVRLVGFCSEGTRRALIYEFMPNESLEKYIFSH 11027
Score = 23.1 bits (44), Expect(3) = 9e-029
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3 / +3
Query: 738 DKKTHVSTKVAGTFGYLSPEYAMR 809
D+ T GT GY++PE R
Sbjct: 11229 DQSIVTLTAARGTMGYIAPELYSR 11300
>gb|AY038002.1| Avena sativa isolate Pc68LrkA receptor kinase gene, complete cds
Length = 5106
Score = 62.0 bits (129), Expect(3) = 8e-030
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +3 / +1
Query: 606 RGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
RG+ YLH+ + RI+H DIK N+LLD NPKIS FGLAKL
Sbjct: 4648 RGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISVFGLAKL 4773
Score = 61.1 bits (127), Expect(3) = 8e-030
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3 / +3
Query: 408 FVAEIETISRVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFGNGRL 560
F+ E+ TI + H N+V+L GFC EG + L+YE+M + SL+K +F R+
Sbjct: 4434 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESLEKYIFSQTRI 4586
Score = 40.5 bits (82), Expect(3) = 8e-030
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3 / +3
Query: 303 LGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGK 401
+G+GG+GSVYKG+L + VA+K L + +G+
Sbjct: 4332 VGQGGFGSVYKGELPNRVPVAVKMLENATGEGE 4430
>gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E08_J15, mRNA sequence
Length = 830
Score = 77.6 bits (163), Expect(2) = 1e-029
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +3 / +1
Query: 756 STKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNYDGKLDXXMAYLLXWVW 935
ST+V GTFGY +PEYAM G ++ K D+++FGVV+LE++ GR D L L+ W
Sbjct: 286 STRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWAT 465
Query: 936 QLYEEDHPLDIADPKL 983
ED D +L
Sbjct: 466 PRLSEDKVRQCVDSRL 513
Score = 67.5 bits (141), Expect(2) = 1e-029
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +3 / +1
Query: 564 LNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDD 740
L+W R KI +G A+GL YLHE++ I+HRDIK+SNVLL KI+DF L+ D
Sbjct: 91 LSWVQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPD 267
>gb|CN820721.1|CN820721 HRO4416_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H01_P02, mRNA
sequence
Length = 606
Score = 79.0 bits (166), Expect(2) = 5e-029
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +3 / +2
Query: 606 RGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVST 761
RGL YLH+ S + ++HRD+K SN+LLD+ +NPKISDFGLAK++ T +T
Sbjct: 8 RGLLYLHKHSRLLVIHRDLKPSNILLDSIMNPKISDFGLAKIFSSNDTEGNT 163
Score = 64.3 bits (134), Expect(2) = 5e-029
Identities = 22/50 (44%), Positives = 39/50 (78%)
Frame = +3 / +2
Query: 735 DDKKTHVSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPN 884
+D + + + +V GT+GY++PEYA +G + K D+F+FGV++LEI++G+ N
Sbjct: 143 NDTEGNTTRRVIGTYGYMAPEYASKGIFSVKSDVFSFGVIILEILSGKRN 292
>gb|CN821458.1|CN821458 HRO4425_E12_I23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_E12_I23, mRNA
sequence
Length = 853
Score = 116 bits (248), Expect = 7e-027
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = +3 / +2
Query: 585 KICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTK 764
+I GI GL YLH E I H D+K +NVLLD + PKISDFGL+KL+ +++T + +
Sbjct: 35 QIIKGICEGLKYLHVELKPPIYHLDLKPANVLLDENMLPKISDFGLSKLFGEEQTQIISN 214
Query: 765 VAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNY 887
GT+ YL PEY RG ++ DIF+ GV++++I+AGR Y
Sbjct: 215 DRGTYAYLPPEYKKRGIVSMMFDIFSLGVIIMKIMAGRTGY 337
>gb|CN817203.1|CN817203 HRO4458_E09_J18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_E09_J18, mRNA sequence
Length = 811
Score = 61.1 bits (127), Expect(4) = 6e-026
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +3 / +1
Query: 252 TYGELRTATENFSSANLLGEGGYGSVYKGKLVDGSVVAIKQLSETSRQGKKE 407
+Y +L AT+NFS +NL+G GGYGSVY+GKLV G + ++ + G ++
Sbjct: 154 SYDDLAQATQNFSESNLIGSGGYGSVYRGKLVQGKLEVAVKVLDLDMHGAEK 309
Score = 42.3 bits (86), Expect(4) = 6e-026
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3 / +2
Query: 624 HEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYD 737
++ S I+H D+K SN+LLD + + DFG+A Y+
Sbjct: 560 NDSGSRSIIHCDVKPSNILLDDDMTAHLGDFGIASFYN 673
Score = 40.9 bits (83), Expect(4) = 6e-026
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3 / +2
Query: 753 VSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVML 860
VS + GT GY+ PEYA G + D+++FG+V+L
Sbjct: 704 VSFGLKGTIGYIGPEYAGGGKSSTCGDVYSFGIVIL 811
Score = 23.1 bits (44), Expect(4) = 6e-026
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 498 LVYEYMESGSLD 533
L+YE+M +G+LD
Sbjct: 419 LIYEFMPNGNLD 454
>gb|CN817871.1|CN817871 HRO4462_E05_J10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_E05_J10, mRNA sequence
Length = 874
Score = 111 bits (236), Expect = 3e-025
Identities = 45/93 (48%), Positives = 64/93 (68%)
Frame = +3 / +1
Query: 609 GLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYL 788
GL YLH E I H D+K +NVLLD + PKISDFGL+KL+ +++T + + GT+ YL
Sbjct: 10 GLKYLHVELKPPIYHLDLKPANVLLDENMLPKISDFGLSKLFGEEQTQIISNDRGTYAYL 189
Query: 789 SPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNY 887
PEY RG ++ DIF+ GV++++I+AGR Y
Sbjct: 190 PPEYKKRGIVSMMFDIFSLGVIIMKIMAGRTGY 288
>gb|CN814801.1|CN814801 HRO4502_F05_K10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_F05_K10, mRNA sequence
Length = 848
Score = 109 bits (233), Expect = 8e-025
Identities = 46/91 (50%), Positives = 61/91 (67%)
Frame = +3 / +2
Query: 606 RGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTKVAGTFGY 785
+GLAYLHEE I+H DIK N+LLDA PKI+DFG+AKL T + GT GY
Sbjct: 14 KGLAYLHEECRDCIIHCDIKPENILLDAEFCPKIADFGMAKLLGRDINAALTTLRGTIGY 193
Query: 786 LSPEYAMRGHMTEKVDIFAFGVVMLEIIAGR 878
L+PE+ +T K D+++FGVV+ E+I+GR
Sbjct: 194 LAPEWVYGHAITHKADVYSFGVVLFELISGR 286
>gb|CN815766.1|CN815766 HRO4510_C06_E12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C06_E12, mRNA sequence
Length = 873
Score = 67.5 bits (141), Expect(2) = 1e-024
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +3 / +3
Query: 576 TRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKL 731
TR I + ARGL Y+H SS IVH D+K+SN+LLD KI+DFGLA++
Sbjct: 12 TRLHIAIDSARGLCYMHHGSSPTIVHCDVKSSNILLDPEFRAKIADFGLARI 167
Score = 61.1 bits (127), Expect(2) = 1e-024
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +3 / +3
Query: 765 VAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNYDGKLDXXMA 914
V GTFGY++PEY + + EKVD+++FGVV+LE+ G+ D L+ +A
Sbjct: 204 VGGTFGYMAPEYGYQRKVNEKVDVYSFGVVLLELTTGQVANDAGLEYCLA 353
>gb|CN816515.1|CN816515 HRO4521_F07_K13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_F07_K13, mRNA sequence
Length = 784
Score = 47.8 bits (98), Expect(5) = 2e-024
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3 / +2
Query: 645 IVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVS 758
I H D+K N+LLD + P I+DFG+++L KTH++
Sbjct: 659 IYHLDLKPENILLDINMMPIIADFGMSRLLASSKTHIT 772
Score = 43.2 bits (88), Expect(5) = 2e-024
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3 / +2
Query: 348 DGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLE 482
+G +A+K+L KEF E + +V+H+N+++L G+C E
Sbjct: 233 NGEEIAMKKLFNMQGIDDKEFTNEFRNLMKVKHQNIIRLIGYCYE 367
Score = 32.7 bits (65), Expect(5) = 2e-024
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / +3
Query: 261 ELRTATENFSSANLLGEGGYGSVYK 335
++ T NFS +G GGYG VYK
Sbjct: 66 QIEKITNNFSEDQRIGIGGYGEVYK 140
Score = 30.4 bits (60), Expect(5) = 2e-024
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3 / +2
Query: 564 LNWSTRYKICLGIARGLAYLH 626
L+W RYKI G GL +LH
Sbjct: 575 LDWPARYKIIKGTCEGLNHLH 637
Score = 24.4 bits (47), Expect(5) = 2e-024
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3 / +2
Query: 495 LLVYEYMESGSLDKALFG 548
+L +EYME GSL + + G
Sbjct: 428 VLCFEYMEGGSLAQKISG 481
>gb|AI978376.1|AI978376 CDO539.R Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO539, mRNA sequence
Length = 412
Score = 107 bits (228), Expect = 4e-024
Identities = 42/96 (43%), Positives = 66/96 (68%)
Frame = +3 / +3
Query: 315 GYGSVYKGKLVDGSVVAIKQLSETSRQGKKEFVAEIETISRVQHRNLVKLFGFCLEGNKP 494
G+GSV++G L DG +VA+K LS TSRQG +EF+ E+ IS ++H NLV L G C EG+
Sbjct: 3 GFGSVFRGMLKDGKLVAVKVLSATSRQGVREFLTELTAISDIKHDNLVTLVGCCAEGSHR 182
Query: 495 LLVYEYMESGSLDKALFGNGRLNLNWSTRYKICLGI 602
+LVY Y+E+ SL + L G+ N+ ++ + ++ + +
Sbjct: 183 ILVYNYLENNSLSQTLLGSSYSNIQFNWKARVKIAV 290
>gb|CN819044.1|CN819044 HRO4474_A04_B08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_A04_B08, mRNA sequence
Length = 734
Score = 103 bits (219), Expect(2) = 5e-024
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +3 / +2
Query: 549 NGRLNLNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAK 728
N RL+++ TR +I A LAYLH + IVH D+K+ N+LL K++DFG ++
Sbjct: 62 NKRLSISLDTRLRIAQESAEALAYLHSSAYPPIVHGDVKSPNILLGDNYTAKVTDFGASR 241
Query: 729 LYDDKKTHVSTKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVML 860
+ + T V GT GYL PEY +TEK D+++FGVV+L
Sbjct: 242 MLPKDEIQFMTMVQGTIGYLDPEYLQERQLTEKSDVYSFGVVLL 373
Score = 23.1 bits (44), Expect(2) = 5e-024
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 500 GL*VHGEWKP**SIVW 547
GL*+H +W P *+ W
Sbjct: 10 GL*MHPKWHPI*AATW 57
>gb|CN818925.1|CN818925 HRO4455_H03_O05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_H03_O05, mRNA sequence
Length = 658
Score = 68.4 bits (143), Expect(2) = 6e-022
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +3 / +2
Query: 585 KICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLY 734
+I LGIARG+ YL ++I+H DIK N+LLD+ PK++DFGLAKLY
Sbjct: 158 EIALGIARGIDYLLRGCEMQILHFDIKPHNILLDSNFVPKVADFGLAKLY 307
Score = 51.0 bits (105), Expect(2) = 6e-022
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3 / +2
Query: 435 RVQHRNLVKLFGFCLEGNKPLLVYEYMESGSLDKALFGNGR 557
R+QH N+ +L G C E + LVYEYM GSLDK +F + +
Sbjct: 5 RIQHVNVDRLVGICSEQMRTALVYEYMPGGSLDKYIFSSDK 127
>gb|CN814872.1|CN814872 HRO4503_D07_H13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D07_H13, mRNA sequence
Length = 728
Score = 97.7 bits (207), Expect = 3e-021
Identities = 40/89 (44%), Positives = 57/89 (64%)
Frame = +3 / +1
Query: 612 LAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLS 791
L +LH +S I+H D+K+SN+LLD K+SDFG + L K T V GT GYL
Sbjct: 22 LNFLHSYASPPIIHGDVKSSNILLDDNYMAKVSDFGASILAPSDKEQFVTMVQGTCGYLD 201
Query: 792 PEYAMRGHMTEKVDIFAFGVVMLEIIAGR 878
PEY +T+K D+++FGV++LEI+ G+
Sbjct: 202 PEYMQTCQLTDKSDVYSFGVILLEILTGQ 288
>gb|CN817085.1|CN817085 HRO4528_A11_B22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_A11_B22, mRNA sequence
Length = 684
Score = 62.5 bits (130), Expect(3) = 6e-021
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +3 / +2
Query: 564 LNWSTRYKICLGIARGLAYLHEESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDDK 743
L+W Y I GI GL YLH + I H D+K N+LL + PKI DFGL++L
Sbjct: 494 LDWCICYGIINGICEGLKYLHTGTENPICHLDLKPGNILLSMDMIPKIGDFGLSRLLGST 673
Query: 744 KT 749
+T
Sbjct: 674 ET 679
Score = 36.3 bits (73), Expect(3) = 6e-021
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 417 EIETISRVQHRNLVKLFGFCLEGNKPLLVYE 509
E + R+QH+N+V+L G+C E ++ YE
Sbjct: 302 ECINLMRIQHQNIVRLVGYCYETQNKIVEYE 394
Score = 34.5 bits (69), Expect(3) = 6e-021
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3 / +2
Query: 264 LRTATENFSSANLLGEGGYGSVYKGKL 344
L + T N+S ++G G YG VYKG L
Sbjct: 155 LESITNNYSKERIIGRGTYGVVYKGIL 235
>gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_A04_B07, mRNA sequence
Length = 747
Score = 77.6 bits (163), Expect(2) = 7e-021
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +3 / +1
Query: 756 STKVAGTFGYLSPEYAMRGHMTEKVDIFAFGVVMLEIIAGRPNYDGKLDXXMAYLLXWVW 935
ST+V GTFGY +PEYAM G ++ K D+++FGVV+LE++ GR D L L+ W
Sbjct: 148 STRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWAT 327
Query: 936 QLYEEDHPLDIADPKL 983
ED D +L
Sbjct: 328 PRLSEDKVRQCVDSRL 375
Score = 38.2 bits (77), Expect(2) = 7e-021
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +3 / +1
Query: 630 ESSIRIVHRDIKASNVLLDATLNPKISDFGLAKLYDD 740
ES I+HRDIK+SNVLL KI+DF L+ D
Sbjct: 19 ESQPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPD 129
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,141,480
Number of Sequences: 8143
Number of extensions: 159838
Number of successful extensions: 827
Number of sequences better than 1.0e-020: 30
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 401452740
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)