TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA231647.1|AA231647 CDO328.R cDNA from oat Avena sativa ... 28 0.76
gb|CN817724.1|CN817724 HRO4461_E09_J17ZS5 Lib AA070E1X Aven... 24 0.94
gb|CN816789.1|CN816789 HRO4524_G08_N16ZS5 Lib AA071E1X Aven... 27 1.4
gb|CN818179.1|CN818179 HRO4471_B01_C01ZS5 Lib AA070E1X Aven... 27 1.4
gb|CN821480.1|CN821480 HRO4425_G10_M19ZS5 Lib AA069E1X Aven... 27 1.4
gb|CN815374.1|CN815374 HRO4509_A01_A01ZS5 Lib AA071E1X Aven... 21 2.2
gb|CN815653.1|CN815653 HRO4514_A08_A16ZS5 Lib AA071E1X Aven... 26 2.7
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 26 2.7
gb|CN815417.1|CN815417 HRO4509_D09_G17ZS5 Lib AA071E1X Aven... 25 5.1
gb|CN817198.1|CN817198 HRO4464_B09_C18ZS5 Lib AA070E1X Aven... 25 5.1
gb|CN816333.1|CN816333 HRO4519_E09_J17ZS5 Lib AA071E1X Aven... 24 7.0
gb|CN818789.1|CN818789 HRO4456_C08_E16ZS5 Lib AA070E1X Aven... 24 7.0
gb|CN820420.1|CN820420 HRO4419_B08_D15ZS5 Lib AA069E1X Aven... 24 7.0
gb|CN820759.1|CN820759 HRO4414_D10_G20ZS5 Lib AA069E1X Aven... 24 7.0
gb|CN821022.1|CN821022 HRO4422_F07_K14ZS5 Lib AA069E1X Aven... 24 7.0
gb|CN821110.1|CN821110 HRO4427_F04_L07ZS5 Lib AA069E1X Aven... 24 7.3
gb|CN816929.1|CN816929 HRO4526_D02_G04ZS5 Lib AA071E1X Aven... 22 8.8
gb|CN816949.1|CN816949 HRO4526_F03_K06ZS5 Lib AA071E1X Aven... 24 9.6
gb|CN817644.1|CN817644 HRO4463_B09_C17ZS5 Lib AA070E1X Aven... 24 9.6
gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Aven... 24 9.6
gb|CN821123.1|CN821123 HRO4427_G05_N09ZS5 Lib AA069E1X Aven... 24 9.6
>gb|AA231647.1|AA231647 CDO328.R cDNA from oat Avena sativa cDNA clone CDO328, mRNA
sequence
Length = 264
Score = 27.6 bits (54), Expect = 0.76
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / -3
Query: 55 NPIFHIFPLIHMQSSWLWFS 114
NP+ H PLI++Q WL S
Sbjct: 145 NPLLHPSPLIYLQLLWLGVS 86
>gb|CN817724.1|CN817724 HRO4461_E09_J17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E09_J17, mRNA sequence
Length = 561
Score = 23.5 bits (45), Expect(2) = 0.94
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1 / -3
Query: 82 IHMQSSWLW 108
+H+ SSWLW
Sbjct: 73 VHITSSWLW 47
Score = 19.9 bits (37), Expect(2) = 0.94
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 49 HSNPIFHIFPLIHM 90
H N I +FP + M
Sbjct: 500 HRNKIVQLFPFVSM 459
>gb|CN816789.1|CN816789 HRO4524_G08_N16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G08_N16, mRNA sequence
Length = 812
Score = 26.7 bits (52), Expect = 1.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2 / -1
Query: 62 YFIFFH*FICKARGYGSQVL 121
++ +H F+CKA+ YG+ L
Sbjct: 674 WYDLYHSFVCKAKVYGTYTL 615
>gb|CN818179.1|CN818179 HRO4471_B01_C01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_B01_C01, mRNA sequence
Length = 657
Score = 26.7 bits (52), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2 / +3
Query: 143 IWCYLH*RVLENHNH 99
IWC LH* +L H H
Sbjct: 213 IWCCLH*AILHPHIH 257
>gb|CN821480.1|CN821480 HRO4425_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_G10_M19, mRNA
sequence
Length = 775
Score = 26.7 bits (52), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2 / +2
Query: 143 IWCYLH*RVLENHNH 99
IWC LH* +L H H
Sbjct: 200 IWCCLH*AILHPHIH 244
>gb|CN815374.1|CN815374 HRO4509_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4509_A01_A01, mRNA sequence
Length = 543
Score = 21.2 bits (40), Expect(2) = 2.2
Identities = 4/12 (33%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 26 WWIISAITTATP 61
WW+++++ ++TP
Sbjct: 53 WWLLASL*SSTP 88
Score = 20.8 bits (39), Expect(2) = 2.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 60 HISYFSIDSYA 92
H+SY +D+YA
Sbjct: 360 HLSYLLLDTYA 392
>gb|CN815653.1|CN815653 HRO4514_A08_A16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A08_A16, mRNA sequence
Length = 737
Score = 25.8 bits (50), Expect = 2.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1 / +3
Query: 40 SNHHSNPIFHIFPLIHMQSSWLW 108
S H + PLI QS WLW
Sbjct: 81 SRSHVEEVASSVPLIQDQSYWLW 149
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete sequence
Length = 16091
Score = 25.8 bits (50), Expect = 2.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 74 FH*FICKARGYGSQVL 121
+H F+CKA+ YG+ +L
Sbjct: 15959 YHFFVCKAKIYGTYML 15912
Score = 24.4 bits (47), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / -3
Query: 32 IISAITTATPYFIF 73
++S +TT PYFIF
Sbjct: 10089 VLSQLTTDQPYFIF 10048
>gb|CN815417.1|CN815417 HRO4509_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D09_G17, mRNA sequence
Length = 600
Score = 24.9 bits (48), Expect = 5.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3 / -3
Query: 241 KYGRGLNEAFFSSASF*MVLTVTEIIL 161
KYG+G+N SS + * + T I+L
Sbjct: 493 KYGKGINNQTGSSINV*TISYSTNIVL 413
>gb|CN817198.1|CN817198 HRO4464_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_B09_C18, mRNA sequence
Length = 799
Score = 24.9 bits (48), Expect = 5.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1 / +3
Query: 49 HSNPIFHIFPLIHMQSSWLW 108
HS+ ++H+F L+ Q +W
Sbjct: 249 HSDELYHVFSLVAGQYPLIW 308
>gb|CN816333.1|CN816333 HRO4519_E09_J17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_E09_J17, mRNA sequence
Length = 366
Score = 24.4 bits (47), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2 / -2
Query: 5 LRANCCSWWIISAIT 49
L SWWI+ AIT
Sbjct: 350 LSLEAASWWILEAIT 306
>gb|CN818789.1|CN818789 HRO4456_C08_E16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_C08_E16, mRNA sequence
Length = 510
Score = 24.4 bits (47), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2 / -1
Query: 203 SIFLNGPHSNRNNLGKYTAFIWCYLH 126
+IFL PH N +Y +F LH
Sbjct: 186 NIFLGSPHLNAMTKVQYMSFTTSLLH 109
>gb|CN820420.1|CN820420 HRO4419_B08_D15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_B08_D15, mRNA
sequence
Length = 669
Score = 24.4 bits (47), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2 / -2
Query: 203 SIFLNGPHSNRNNLGKYTAFIWCYLH 126
+IFL PH N +Y +F LH
Sbjct: 440 NIFLGSPHLNAMTKVQYMSFTTSLLH 363
>gb|CN820759.1|CN820759 HRO4414_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_D10_G20, mRNA
sequence
Length = 589
Score = 24.4 bits (47), Expect = 7.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXIN 257
++D ++ F+P PY L IN
Sbjct: 543 KQDTTRTESKFDPHPYILLYIN 478
>gb|CN821022.1|CN821022 HRO4422_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F07_K14, mRNA
sequence
Length = 533
Score = 24.4 bits (47), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2 / +1
Query: 65 FIFFH*FICKARGYG 109
F FF+ +IC +R YG
Sbjct: 190 FSFFYSYICSSRKYG 234
>gb|CN821110.1|CN821110 HRO4427_F04_L07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F04_L07, mRNA
sequence
Length = 584
Score = 23.5 bits (45), Expect(2) = 7.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1 / +3
Query: 205 RKRKLHLIPDHTS 243
RK+K+HL+P + S
Sbjct: 135 RKKKIHLVPGNVS 173
Score = 16.6 bits (30), Expect(2) = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3 / +2
Query: 132 ITPNKGSILSKIISVTVRTIQKD 200
++ + SIL K + RT +KD
Sbjct: 80 LSRSNNSILHKN*QLQYRTKEKD 148
>gb|CN816929.1|CN816929 HRO4526_D02_G04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_D02_G04, mRNA sequence
Length = 522
Score = 22.1 bits (42), Expect(2) = 8.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +2 / +1
Query: 5 LRANCCSWWII 37
+R CC +W+I
Sbjct: 274 IRTTCCIYWLI 306
Score = 17.6 bits (32), Expect(2) = 8.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2 / +3
Query: 191 SERC*GKESFI*SPTILPI 247
+ RC G + *+P LP+
Sbjct: 417 NSRCPGNHTRQ*APYFLPL 473
>gb|CN816949.1|CN816949 HRO4526_F03_K06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_F03_K06, mRNA sequence
Length = 722
Score = 24.0 bits (46), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 23 SWWIISAITTATPY 64
S WIIS IT +TP+
Sbjct: 580 SVWIISYITRSTPF 621
>gb|CN817644.1|CN817644 HRO4463_B09_C17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_B09_C17, mRNA sequence
Length = 526
Score = 24.0 bits (46), Expect = 9.6
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 210 KKASFNPRPYFRLXINWLY 266
+ +S+NP P FRL ++ ++
Sbjct: 333 RNSSYNPLPLFRLVLSAIF 389
>gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E10_J20, mRNA
sequence
Length = 776
Score = 24.0 bits (46), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 19 LLLVDHLSNHHSNPIFHIF 75
L L +L+N + +PIFH+F
Sbjct: 346 LNLKTYLANAYLHPIFHMF 402
>gb|CN821123.1|CN821123 HRO4427_G05_N09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G05_N09, mRNA
sequence
Length = 794
Score = 24.0 bits (46), Expect = 9.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1 / -2
Query: 28 VDHLSNHHSNPIFHIFPLIHMQSSWL 105
+ HLS + FH+ + HM +W+
Sbjct: 787 ITHLSFQCIHKQFHVLKVCHMLLAWM 710
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,119,831
Number of Sequences: 8143
Number of extensions: 33543
Number of successful extensions: 2747
Number of sequences better than 10.0: 23
length of database: 1,567,487
effective HSP length: 40
effective length of database: 1,241,767
effective search space used: 79473088
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)