TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF14f01.yg.2.1
(319 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Aven... 66 7e-021
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
sequence
Length = 733
Score = 65.7 bits (137), Expect(2) = 7e-021
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = -3 / +1
Query: 317 YLXXXXPIVRDRFNPNACAWAYGVNVFXLXXXXRDGCTELFHQYMEMNEDXELW 156
YL P + F+PNAC WAYG+N+F L T ++H++ MNED LW
Sbjct: 151 YLNFSNPHIARNFDPNACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLW 312
Score = 47.3 bits (97), Expect(2) = 7e-021
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -3 / +1
Query: 107 TKXXDKSWHVMGLGYNPSISPEAIRSAAV 21
T DKSWHV+GLGYNPSI I +AAV
Sbjct: 358 THPLDKSWHVLGLGYNPSIDRSEIDNAAV 444
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,396,091
Number of Sequences: 8143
Number of extensions: 34636
Number of successful extensions: 2854
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 40
effective length of database: 1,241,767
effective search space used: 80714855
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)