TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Aven... 232 5e-062
gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Aven... 214 9e-057
gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Aven... 88 1e-036
gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Aven... 92 9e-025
>gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F02_L03, mRNA sequence
Length = 668
Score = 232 bits (500), Expect = 5e-062
Identities = 91/182 (50%), Positives = 127/182 (69%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+F SHF +P++ L +VVVLDDD+++Q+DLS LWNLDMG KV GAV+FCGVRLGQ+
Sbjct: 25 LSLFSHSHFFIPEIFKDLKKVVVLDDDVVIQRDLSFLWNLDMGDKVNGAVEFCGVRLGQV 204
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAG 362
+ + D SC W SG+NVI LDKW+ +T + +++++ + R A
Sbjct: 205 RNLLGKTKYDPKSCAWKSGVNVINLDKWKKHKVTEKYLMLLKQVKIKDEVALREAAFSIS 384
Query: 363 LLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRK 542
LL+FQ L+YPL++ + SGLG+DYGI +A+LHYNG MKPWL+LGIL+YK YWR+
Sbjct: 385 LLSFQHLIYPLDERLILSGLGYDYGIDPEVARSSASLHYNGNMKPWLELGILEYKKYWRR 564
Query: 543 YL 548
+L
Sbjct: 565 FL 570
Score = 62.5 bits (130), Expect(2) = 2e-023
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -3 / -1
Query: 547 RYFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KA 368
R LQ FL SS+P SSQGFI PL*C A ++ IP*S P PD SS+G R *K
Sbjct: 569 RNLLQYFLYSSMPNSSQGFILPL*CSDAELRATSGSIP*SYPSPDRISLSSRG*MRC*KD 390
Query: 367 SRPAGSACSR 338
++ A SR
Sbjct: 389 NKLIEKAASR 360
Score = 62.0 bits (129), Expect(2) = 2e-023
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = -3 / -1
Query: 175 PNLTPQNWTAPITLPPISRFHRGDKSFWTIKSSSRTTTLFKLGRRSGKRKCE 20
P+LTPQN TAP TL PISRFH+ D+S SSS TTT + SG +K E
Sbjct: 197 PSLTPQNSTAPFTLSPISRFHKNDRSR*MTTSSSNTTTFLRSLNISGIKK*E 42
>gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_H06_O12, mRNA sequence
Length = 837
Score = 214 bits (462), Expect = 9e-057
Identities = 86/165 (52%), Positives = 116/165 (70%)
Frame = +3 / +1
Query: 54 LNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYIADHNVDDDSCVWL 233
L +VVVLDDD+++Q+DLS LWNLDMG KV GAV+FCGVRLGQ++ + D SC W+
Sbjct: 13 LKKVVVLDDDVVIQRDLSFLWNLDMGDKVNGAVEFCGVRLGQVRNLLGKAKYDPKSCAWM 192
Query: 234 SGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDLVYPLEDSWVE 413
SG+NVI LDKWR +T + +++++ + R A LL+FQ L+YPL++
Sbjct: 193 SGVNVINLDKWRKHKVTENYLMLLKQVKIKDEVALREAAFSISLLSFQHLIYPLDERLTL 372
Query: 414 SGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
SGLG+DYGI +A+LHYNG MKPWL+LGIL+YK YWR++L
Sbjct: 373 SGLGYDYGIDPEVARSSASLHYNGNMKPWLELGILEYKKYWRRFL 507
Score = 65.7 bits (137), Expect(2) = 2e-023
Identities = 35/70 (50%), Positives = 41/70 (58%)
Frame = -3 / -2
Query: 547 RYFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KA 368
R LQ FL SS+P SS GFI PL*C A ++ IP*S P PD SS+GY R *K
Sbjct: 506 RNLLQYFLYSSMPNSSHGFILPL*CSDAELRATSGSIP*SYPSPDRVSLSSRGYMRC*KD 327
Query: 367 SRPAGSACSR 338
++ A SR
Sbjct: 326 NKLIEKAASR 297
Score = 59.3 bits (123), Expect(2) = 2e-023
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = -3 / -2
Query: 175 PNLTPQNWTAPITLPPISRFHRGDKSFWTIKSSSRTTTLFK 53
P+LTPQN TAP TL PISRFH+ D+S SSS TTT +
Sbjct: 134 PSLTPQNSTAPFTLSPISRFHKNDRSR*MTTSSSNTTTFLR 12
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
sequence
Length = 733
Score = 87.7 bits (185), Expect(3) = 1e-036
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ I +I+ AA HYNG MKPWL+L +
Sbjct: 313 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMT 492
Query: 519 DYKNYWRKYL 548
Y+ YW +Y+
Sbjct: 493 KYRPYWTRYI 522
Score = 61.1 bits (127), Expect(3) = 1e-036
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +3 / +1
Query: 54 LNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYI 194
L++++ LDDD++VQKDL+ LW++D+ GKV GAV+ CG + Y+
Sbjct: 16 LDKILFLDDDIVVQKDLTGLWDVDLKGKVNGAVETCGESFHRFDKYL 156
Score = 36.8 bits (74), Expect(3) = 1e-036
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L +W++ IT ++
Sbjct: 184 NFDPNACGWAYGMNIFDLKQWKNKDITGIY 273
>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A06_B12, mRNA sequence
Length = 570
Score = 91.8 bits (194), Expect(2) = 9e-025
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + H +I+ AA +HYNG MKPWL++ +
Sbjct: 202 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHSEIDSAAVIHYNGNMKPWLEIAMT 381
Query: 519 DYKNYWRKYL 548
Y+ YW KY+
Sbjct: 382 KYRPYWTKYI 411
Score = 35.9 bits (72), Expect(2) = 9e-025
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L++W+ IT ++
Sbjct: 73 NFDANACGWAYGMNMFDLEEWKKKDITGIY 162
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,950,549
Number of Sequences: 8143
Number of extensions: 101793
Number of successful extensions: 1505
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 176469264
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)