TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF12e06.yg.2.1
         (561 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815983.1|CN815983  HRO4515_F02_L03ZS5 Lib AA071E1X Aven...   232   5e-062
gb|CN814825.1|CN814825  HRO4502_H06_O12ZS5 Lib AA071E1X Aven...   214   9e-057
gb|CN821264.1|CN821264  HRO4423_D02_H03ZS5 Lib AA069E1X Aven...    88   1e-036
gb|CN815287.1|CN815287  HRO4508_A06_B12ZS5 Lib AA071E1X Aven...    92   9e-025
>gb|CN815983.1|CN815983 HRO4515_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_F02_L03, mRNA sequence
          Length = 668

 Score =  232 bits (500), Expect = 5e-062
 Identities = 91/182 (50%), Positives = 127/182 (69%)
 Frame = +3 / +1

                                                                       
Query: 3   ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
           +S+F  SHF +P++   L +VVVLDDD+++Q+DLS LWNLDMG KV GAV+FCGVRLGQ+
Sbjct: 25  LSLFSHSHFFIPEIFKDLKKVVVLDDDVVIQRDLSFLWNLDMGDKVNGAVEFCGVRLGQV 204

                                                                       
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAG 362
           +  +     D  SC W SG+NVI LDKW+   +T  +   +++++     + R  A    
Sbjct: 205 RNLLGKTKYDPKSCAWKSGVNVINLDKWKKHKVTEKYLMLLKQVKIKDEVALREAAFSIS 384

                                                                       
Query: 363 LLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRK 542
           LL+FQ L+YPL++  + SGLG+DYGI       +A+LHYNG MKPWL+LGIL+YK YWR+
Sbjct: 385 LLSFQHLIYPLDERLILSGLGYDYGIDPEVARSSASLHYNGNMKPWLELGILEYKKYWRR 564

             
Query: 543 YL 548
           +L
Sbjct: 565 FL 570

 Score = 62.5 bits (130), Expect(2) = 2e-023
 Identities = 35/70 (50%), Positives = 41/70 (58%)
 Frame = -3 / -1

                                                                       
Query: 547 RYFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KA 368
           R  LQ FL SS+P SSQGFI PL*C  A    ++  IP*S P PD    SS+G  R *K 
Sbjct: 569 RNLLQYFLYSSMPNSSQGFILPL*CSDAELRATSGSIP*SYPSPDRISLSSRG*MRC*KD 390

                     
Query: 367 SRPAGSACSR 338
           ++    A SR
Sbjct: 389 NKLIEKAASR 360

 Score = 62.0 bits (129), Expect(2) = 2e-023
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = -3 / -1

                                                               
Query: 175 PNLTPQNWTAPITLPPISRFHRGDKSFWTIKSSSRTTTLFKLGRRSGKRKCE 20
           P+LTPQN TAP TL PISRFH+ D+S     SSS TTT  +    SG +K E
Sbjct: 197 PSLTPQNSTAPFTLSPISRFHKNDRSR*MTTSSSNTTTFLRSLNISGIKK*E 42
>gb|CN814825.1|CN814825 HRO4502_H06_O12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_H06_O12, mRNA sequence
          Length = 837

 Score =  214 bits (462), Expect = 9e-057
 Identities = 86/165 (52%), Positives = 116/165 (70%)
 Frame = +3 / +1

                                                                       
Query: 54  LNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYIADHNVDDDSCVWL 233
           L +VVVLDDD+++Q+DLS LWNLDMG KV GAV+FCGVRLGQ++  +     D  SC W+
Sbjct: 13  LKKVVVLDDDVVIQRDLSFLWNLDMGDKVNGAVEFCGVRLGQVRNLLGKAKYDPKSCAWM 192

                                                                       
Query: 234 SGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDLVYPLEDSWVE 413
           SG+NVI LDKWR   +T  +   +++++     + R  A    LL+FQ L+YPL++    
Sbjct: 193 SGVNVINLDKWRKHKVTENYLMLLKQVKIKDEVALREAAFSISLLSFQHLIYPLDERLTL 372

                                                        
Query: 414 SGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
           SGLG+DYGI       +A+LHYNG MKPWL+LGIL+YK YWR++L
Sbjct: 373 SGLGYDYGIDPEVARSSASLHYNGNMKPWLELGILEYKKYWRRFL 507

 Score = 65.7 bits (137), Expect(2) = 2e-023
 Identities = 35/70 (50%), Positives = 41/70 (58%)
 Frame = -3 / -2

                                                                       
Query: 547 RYFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KA 368
           R  LQ FL SS+P SS GFI PL*C  A    ++  IP*S P PD    SS+GY R *K 
Sbjct: 506 RNLLQYFLYSSMPNSSHGFILPL*CSDAELRATSGSIP*SYPSPDRVSLSSRGYMRC*KD 327

                     
Query: 367 SRPAGSACSR 338
           ++    A SR
Sbjct: 326 NKLIEKAASR 297

 Score = 59.3 bits (123), Expect(2) = 2e-023
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = -3 / -2

                                                    
Query: 175 PNLTPQNWTAPITLPPISRFHRGDKSFWTIKSSSRTTTLFK 53
           P+LTPQN TAP TL PISRFH+ D+S     SSS TTT  +
Sbjct: 134 PSLTPQNSTAPFTLSPISRFHKNDRSR*MTTSSSNTTTFLR 12
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
           sequence
          Length = 733

 Score = 87.7 bits (185), Expect(3) = 1e-036
 Identities = 32/70 (45%), Positives = 45/70 (64%)
 Frame = +3 / +1

                                                                       
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
           +L  LP GL+ F  L +PL+ SW   GLG++  I   +I+ AA  HYNG MKPWL+L + 
Sbjct: 313 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAHYNGNMKPWLELAMT 492

                     
Query: 519 DYKNYWRKYL 548
            Y+ YW +Y+
Sbjct: 493 KYRPYWTRYI 522

 Score = 61.1 bits (127), Expect(3) = 1e-036
 Identities = 22/47 (46%), Positives = 35/47 (74%)
 Frame = +3 / +1

                                                          
Query: 54  LNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYI 194
           L++++ LDDD++VQKDL+ LW++D+ GKV GAV+ CG    +   Y+
Sbjct: 16  LDKILFLDDDIVVQKDLTGLWDVDLKGKVNGAVETCGESFHRFDKYL 156

 Score = 36.8 bits (74), Expect(3) = 1e-036
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3 / +1

                                         
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
           N D ++C W  G+N+ +L +W++  IT ++
Sbjct: 184 NFDPNACGWAYGMNIFDLKQWKNKDITGIY 273
>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_A06_B12, mRNA sequence
          Length = 570

 Score = 91.8 bits (194), Expect(2) = 9e-025
 Identities = 32/70 (45%), Positives = 47/70 (67%)
 Frame = +3 / +1

                                                                       
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
           +L  LP GL+ F  L +PL+ SW   GLG++  + H +I+ AA +HYNG MKPWL++ + 
Sbjct: 202 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHSEIDSAAVIHYNGNMKPWLEIAMT 381

                     
Query: 519 DYKNYWRKYL 548
            Y+ YW KY+
Sbjct: 382 KYRPYWTKYI 411

 Score = 35.9 bits (72), Expect(2) = 9e-025
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3 / +1

                                         
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
           N D ++C W  G+N+ +L++W+   IT ++
Sbjct: 73  NFDANACGWAYGMNMFDLEEWKKKDITGIY 162
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,950,549
Number of Sequences: 8143
Number of extensions: 101793
Number of successful extensions: 1505
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 176469264
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)