TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE23e10.yg.3.1
(2083 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816099.1|CN816099 HRO4517_A03_A05ZS5 Lib AA071E1X Aven... 491 e-143
gb|CN815134.1|CN815134 HRO4506_C04_E08ZS5 Lib AA071E1X Aven... 462 e-130
gb|CN815185.1|CN815185 HRO4506_G12_M24ZS5 Lib AA071E1X Aven... 182 1e-046
gb|CN815954.1|CN815954 HRO4515_C09_F17ZS5 Lib AA071E1X Aven... 97 8e-021
>gb|CN816099.1|CN816099 HRO4517_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A03_A05, mRNA sequence
Length = 720
Score = 491 bits (1067), Expect(2) = e-143
Identities = 197/223 (88%), Positives = 214/223 (95%)
Frame = +1 / +2
Query: 1162 KMERGGLTEKVVRDRVLVFRFTDVGKLPPPVLQFVEVKFGYTPDNLIYKSLDFGVDLDSR 1341
KMERGGL EKVV D++LVFRFTDVGKLPPPVLQF +V FGYTPDNLIYK+LDFGVDLDSR
Sbjct: 11 KMERGGLAEKVVNDKILVFRFTDVGKLPPPVLQFADVTFGYTPDNLIYKNLDFGVDLDSR 190
Query: 1342 IALVGPNGAGKSTLLKLMTGDLAPLDGMVRRHNHLRIAQYHQHLADKLDLDMPALAYMMK 1521
+ALVGPNGAGKSTLLKLMTGDL PLDGMVRRHNHLRIAQ+HQHL +KLDLDMPAL YMM+
Sbjct: 191 VALVGPNGAGKSTLLKLMTGDLTPLDGMVRRHNHLRIAQFHQHLTEKLDLDMPALQYMMR 370
Query: 1522 EYPGTEEEKMRAAVGRFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNH 1701
EYPG EEEKMRA++G+FGLSGKAQVMPM+NLSDGQ++RVIFAWLA+RQPQ+LLLDEPTNH
Sbjct: 371 EYPGNEEEKMRASIGKFGLSGKAQVMPMKNLSDGQKARVIFAWLAFRQPQMLLLDEPTNH 550
Query: 1702 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCENQ 1830
LDIETIDSLAEAL EWDGGLVLVSHDFRLINQVAQEIWVCEN+
Sbjct: 551 LDIETIDSLAEALKEWDGGLVLVSHDFRLINQVAQEIWVCENR 679
Score = 329 bits (713), Expect(2) = 1e-092
Identities = 146/221 (66%), Positives = 172/221 (77%)
Frame = -2 / -3
Query: 1827 ILTHPNLLSNLVDQPEIMAHQDQTTIPLIQCLRQGVNGLNVQMICRLIEQ*QLRLPICQP 1648
+LTHP+LLSNLVDQPE+MAH+D + IP +QCLR+GVN LNV+MIC LI+Q LRLP CQP
Sbjct: 676 VLTHPDLLSNLVDQPEVMAHED*SPIPFLQCLRKGVNCLNVKMICGLIKQKHLRLPECQP 497
Query: 1647 CKDDTAPLPIRKIPHWHHLRLS**AKPANSSSHLLFFGPRVFLHHVSQSRHVQIQLVRKM 1468
KD+T L I +I HWH+L L * AK AN SSHLL PRV HHV QS H+QIQL+ +M
Sbjct: 496 SKDNTGLLSI*QIFHWHYLCLP*EAKLAN*SSHLLLLIPRVLPHHVLQSWHIQIQLLSEM 317
Query: 1467 LMVLCNAQVIVAPNHAI*WSKVTSHKLQKSALPCTIGTNQCDSRVKINSKVKTLVYEIIW 1288
LM L NA VIVAP+HAI WSKVTSH+LQ+ A PCTIGTNQC+S VK+N+KVK LV EII
Sbjct: 316 LMKLSNA*VIVAPDHAIQWSKVTSHELQECAFPCTIGTNQCNS*VKVNTKVKVLVNEIIR 137
Query: 1287 CIPKLDFNKLQHRWRKFANICKPEH*NSVPNNLLGETTSLH 1165
+ K D +KL H W +FANICK EH N V +NLL +TTSLH
Sbjct: 136 SVSKRDISKL*HWWWEFANICKAEHQNLVIDNLLSKTTSLH 14
Score = 319 bits (691), Expect(2) = 1e-088
Identities = 130/229 (56%), Positives = 160/229 (69%)
Frame = +3 / +1
Query: 1161 KDGARWSHREGC*GQSSSVQVYRCWQTSSTCAAVC*SQVWVYTR*SHIQES*LWS*S*L* 1340
++GARWS EGC Q S V +YRCWQT +T A +C* VW+++ *SH+QE *LW * *L
Sbjct: 10 ENGARWSC*EGCQ*QDSGVPLYRCWQTPTTSATIC*CHVWIHSG*SHLQEP*LWC*P*LK 189
Query: 1341 NRIGWSQWCREEHSSEAYDW*PCSIRWHGSAPQSPAHCTVPSASCGQAGSGHAGSGLHDE 1520
+ GWSQWCRE+H+ EA+DW*P SI WHG APQSP HC++ S S +AGSG+A S +HDE
Sbjct: 190 SCTGWSQWCREKHTPEAHDW*PYSIGWHGQAPQSPTHCSISSTSH*EAGSGYASSAVHDE 369
Query: 1521 GIPWDRRREDASCCWQVWPIRKGAGDANEESF*WAKEPCHLCMVGIXXXXXXXXXXXDKS 1700
G+PW+ ED S WQVWP+R+G G+ANE+S W + PC+LC+ GI KS
Sbjct: 370 GVPWE*GGEDESFNWQVWPLREGTGNANEKSVRWTEGPCYLCLAGIQAAADAFA**AHKS 549
Query: 1701 FGH*DH*LPGGGTE*VGWWFGLGEP*FQADQPGCSRDLGV*ESGGDKVG 1847
H*D+*LP GGTE +GW EP* QADQPGCSRDLGV*E + G
Sbjct: 550 S*H*DN*LPCGGTEGMGWGISPREP*LQADQPGCSRDLGV*EQAVTRWG 696
Score = 300 bits (650), Expect(3) = e-102
Identities = 131/167 (78%), Positives = 139/167 (83%)
Frame = -3 / -1
Query: 1661 LYANHAKMTRLLCPSERFLIGITCAFPDRPNLPTAARIFSSSVPGYSFIM*ARAGMSRSS 1482
L A+ AK+TR CPS+RF IGITCAFP+RPNLP A IFSSS PGYS IM RAG+SRSS
Sbjct: 510 LNASQAKITRAFCPSDRFFIGITCAFPERPNLPIEALIFSSSFPGYSLIMYCRAGISRSS 331
Query: 1481 LSARC*WYCAMRR*LWRRTMPSNGARSPVISFRRVLFPAPLGPTNAILESRSTPKSRLLY 1302
S RC* AMRR*LWR TMPSNG RSPV+SFR VLFPAPLGPT+A LESRSTPKSR L
Sbjct: 330 FSVRC**N*AMRR*LWRLTMPSNGVRSPVMSFRSVLFPAPLGPTSATLESRSTPKSRFL* 151
Query: 1301 MRLSGVYPNLTSTNCSTGGGSLPTSVNLNTRTLSLTTFSVRPPRSIF 1161
MRLSGVYPN+TS NCSTGGGSLPTSV NTR LSLTTFS RPPRSIF
Sbjct: 150 MRLSGVYPNVTSANCSTGGGSLPTSVKRNTRILSLTTFSARPPRSIF 10
Score = 219 bits (472), Expect(3) = 9e-066
Identities = 110/179 (61%), Positives = 122/179 (68%)
Frame = +2 / +3
Query: 1289 QIISYTRVLTLELILTLESHWLVPMVQGRAXXXXXXXXXXXH*MAWFGATITCALHSTIS 1468
+IIS+TR LTL L LT E HWLVPMVQG+A H MAW GATIT AL + I+
Sbjct: 138 RIISFTRTLTLVLTLTQELHWLVPMVQGKAHS*SS*LVTLLHWMAWSGATITYALLNFIN 317
Query: 1469 ILRTSWIWTCRLWLT**RNTLGPKKRRCELLLAGLAYQERRR*CQ*GIFLMGKGAVSSLH 1648
I SWIW C+L T** +TLG ++RR EL LA LA Q R R*CQ* I M + V SL
Sbjct: 318 ISLRSWIWICQLCST**GSTLGMRRRR*ELQLASLASQGRHR*CQ*KICQMDRRPVLSLL 497
Query: 1649 GWHIGSRNCYCSMSRQIIWTLRPLTPWRRH*MSGMVVWSW*AMISG*STRLLKRFGCVR 1825
GWH GSR C+C MS QII TLR LTP RRH* +GM S *AM SG*STRLLKR GCVR
Sbjct: 498 GWHSGSRRCFCLMSPQIILTLRQLTPLRRH*RNGMGD*SS*AMTSG*STRLLKRSGCVR 674
Score = 119 bits (255), Expect(4) = 9e-054
Identities = 60/111 (54%), Positives = 64/111 (57%)
Frame = -1 / -2
Query: 1846 PTLSPPDSHTPKSLEQPG*SA*NHGSPRPNHHPTHSVPPPGSQWSQCPNDLSAHRXXXXX 1667
P L SHTP+SLEQPG*SA*+HGS HP SVPP GSQ SQC +DL AH+
Sbjct: 695 PHLVTACSHTPRSLEQPG*SA*SHGSRGLIPHPIPSVPPQGSQLSQCQDDLWAHQAKASA 516
Query: 1666 XAYMPTMQR*HGSFAHQKDSSLASPAPFLIGQTCXXXXXXXXXXXQGIPSS 1514
A MP QR*HG H D SLA P P L GQTC QG PSS
Sbjct: 515 AA*MPAKQR*HGPSVHLTDFSLALPVPSLRGQTCQLKLSSSPPHSQGTPSS 363
Score = 81.3 bits (171), Expect(3) = e-102
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -3 / -1
Query: 1826 FSHTQIS*ATWLISLKSWLTKTKPPSHSFSASARE 1722
FSHTQIS*ATWLISLKSWLT+T PPSHSFSASARE
Sbjct: 675 FSHTQIS*ATWLISLKSWLTRTNPPSHSFSASARE 571
Score = 77.6 bits (163), Expect(4) = 9e-054
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = -1 / -2
Query: 1453 QCAGDCGAEPCHLMEQGHQS*ASEECSSLHHWDQPMRFXXXXXXXXXXSCI*D 1295
QC GDCGA PCH ME GHQS*AS C SLHHWDQP++ SC *D
Sbjct: 302 QCVGDCGA*PCHPME*GHQS*ASGVCFSLHHWDQPVQLLSQGQHQSQGSCK*D 144
Score = 39.6 bits (80), Expect(3) = 9e-066
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +2 / +3
Query: 1166 WSEVVSPRRLLGTEF*CSGLQMLAN 1240
WSEVV RRL T F CS LQMLAN
Sbjct: 15 WSEVVLLRRLSMTRFWCSALQMLAN 89
Score = 39.1 bits (79), Expect(4) = 9e-054
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1 / -2
Query: 1237 CQHL*T*TLELCP*QPSR*DHLAP 1166
CQHL*+ T E C *QPS+ DHLAP
Sbjct: 86 CQHL*SGTPESCH*QPSQQDHLAP 15
Score = 35.0 bits (70), Expect(2) = e-143
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 1828 QAVTRWEGDIMDFK 1869
QAVTRW GDIMDFK
Sbjct: 676 QAVTRWGGDIMDFK 717
Score = 27.6 bits (54), Expect(3) = e-102
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / -3
Query: 1867 *NP*YHLPTLSPP 1829
*NP*YHLPT PP
Sbjct: 715 *NP*YHLPT*LPP 677
Score = 27.2 bits (53), Expect(3) = 9e-066
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 1815 GV*ESGGDKVGR*YHGFQ 1868
G +GG+ VGR*Y+GFQ
Sbjct: 663 GCVRTGGN*VGR*YYGFQ 716
Score = 27.2 bits (53), Expect(4) = 9e-054
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -1
Query: 1869 LEIHDITFPPCHRL 1828
LEIH+IT PP +RL
Sbjct: 717 LEIHNITSPPSYRL 676
Score = 27.2 bits (53), Expect(2) = 1e-092
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -3 / -2
Query: 1868 LKSMISPSHLVTA 1830
LKS+ISP HLVTA
Sbjct: 716 LKSIISPPHLVTA 678
Score = 24.4 bits (47), Expect(2) = 1e-088
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 1829 RR*QGGKVISWIS 1867
RR* GG+VI WIS
Sbjct: 677 RR*LGGEVILWIS 715
>gb|CN815134.1|CN815134 HRO4506_C04_E08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C04_E08, mRNA sequence
Length = 646
Score = 462 bits (1002), Expect = e-130
Identities = 186/211 (88%), Positives = 202/211 (95%)
Frame = +1 / +1
Query: 1171 RGGLTEKVVRDRVLVFRFTDVGKLPPPVLQFVEVKFGYTPDNLIYKSLDFGVDLDSRIAL 1350
RGGL EKVV D++LVFRFTDVGKLPPPVLQF +V FGYTPDNLIYK+LDFGVDLDSR+AL
Sbjct: 13 RGGLAEKVVNDKILVFRFTDVGKLPPPVLQFADVTFGYTPDNLIYKNLDFGVDLDSRVAL 192
Query: 1351 VGPNGAGKSTLLKLMTGDLAPLDGMVRRHNHLRIAQYHQHLADKLDLDMPALAYMMKEYP 1530
VGPNGAGKSTLLKLMTGDL PLDGMVRRHNHLRIAQ+HQHL +KLDLDMPAL YMM+EYP
Sbjct: 193 VGPNGAGKSTLLKLMTGDLTPLDGMVRRHNHLRIAQFHQHLTEKLDLDMPALQYMMREYP 372
Query: 1531 GTEEEKMRAAVGRFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDI 1710
G EEEKMRA++G+FGLSGKAQVMPM+NLSDGQ++RVIFAWLA+RQPQ+LLLDEPTNHLDI
Sbjct: 373 GNEEEKMRASIGKFGLSGKAQVMPMKNLSDGQKARVIFAWLAFRQPQMLLLDEPTNHLDI 552
Query: 1711 ETIDSLAEALNEWDGGLVLVSHDFRLINQVA 1803
ETIDSLAEAL EWDGGLVLVSHDFRLINQVA
Sbjct: 553 ETIDSLAEALKEWDGGLVLVSHDFRLINQVA 645
Score = 307 bits (665), Expect = 4e-084
Identities = 138/211 (65%), Positives = 162/211 (76%)
Frame = -2 / -2
Query: 1803 SNLVDQPEIMAHQDQTTIPLIQCLRQGVNGLNVQMICRLIEQ*QLRLPICQPCKDDTAPL 1624
SNLVDQPE+MAH+D + IP +QCLR+GVN LNV+MIC LI+Q LRLP CQP KD+T L
Sbjct: 645 SNLVDQPEVMAHED*SPIPFLQCLRKGVNCLNVKMICGLIKQKHLRLPECQPSKDNTGLL 466
Query: 1623 PIRKIPHWHHLRLS**AKPANSSSHLLFFGPRVFLHHVSQSRHVQIQLVRKMLMVLCNAQ 1444
I +I HWH+L L * AK AN SSHLL PRV HHV QS H+QIQL+ +MLM L NA
Sbjct: 465 SI*QIFHWHYLCLP*EAKLAN*SSHLLLLIPRVLPHHVLQSWHIQIQLLSEMLMKLSNA* 286
Query: 1443 VIVAPNHAI*WSKVTSHKLQKSALPCTIGTNQCDSRVKINSKVKTLVYEIIWCIPKLDFN 1264
VIVAP+HAI WSKVTSH+LQ+ A PCTIGTNQC+S VK+N+KVK LV EII + K D +
Sbjct: 285 VIVAPDHAIQWSKVTSHELQECAFPCTIGTNQCNS*VKVNTKVKVLVNEIIRSVSKRDIS 106
Query: 1263 KLQHRWRKFANICKPEH*NSVPNNLLGETTS 1171
KL H W +FANICK EH N V +NLL +TTS
Sbjct: 105 KL*HWWWEFANICKAEHQNLVIDNLLSKTTS 13
Score = 299 bits (647), Expect = 1e-081
Identities = 120/211 (56%), Positives = 147/211 (69%)
Frame = +3 / +3
Query: 1170 ARWSHREGC*GQSSSVQVYRCWQTSSTCAAVC*SQVWVYTR*SHIQES*LWS*S*L*NRI 1349
ARWS EGC Q S V +YRCWQT +T A +C* VW+++ *SH+QE *LW * *L +
Sbjct: 12 ARWSC*EGCQ*QDSGVPLYRCWQTPTTSATIC*CHVWIHSG*SHLQEP*LWC*P*LKSCT 191
Query: 1350 GWSQWCREEHSSEAYDW*PCSIRWHGSAPQSPAHCTVPSASCGQAGSGHAGSGLHDEGIP 1529
GWSQWCRE+H+ EA+DW*P SI WHG APQSP HC++ S S +AGSG+A S +HDEG+P
Sbjct: 192 GWSQWCREKHTPEAHDW*PYSIGWHGQAPQSPTHCSISSTSH*EAGSGYASSAVHDEGVP 371
Query: 1530 WDRRREDASCCWQVWPIRKGAGDANEESF*WAKEPCHLCMVGIXXXXXXXXXXXDKSFGH 1709
W+ ED S WQVWP+R+G G+ANE+S W + PC+LC+ GI KS H
Sbjct: 372 WE*GGEDESFNWQVWPLREGTGNANEKSVRWTEGPCYLCLAGIQAAADAFA**AHKSS*H 551
Query: 1710 *DH*LPGGGTE*VGWWFGLGEP*FQADQPGC 1802
*D+*LP GGTE +GW EP* QADQPGC
Sbjct: 552 *DN*LPCGGTEGMGWGISPREP*LQADQPGC 644
Score = 294 bits (636), Expect(2) = 4e-093
Identities = 128/164 (78%), Positives = 136/164 (82%)
Frame = -3 / -3
Query: 1661 LYANHAKMTRLLCPSERFLIGITCAFPDRPNLPTAARIFSSSVPGYSFIM*ARAGMSRSS 1482
L A+ AK+TR CPS+RF IGITCAFP+RPNLP A IFSSS PGYS IM RAG+SRSS
Sbjct: 503 LNASQAKITRAFCPSDRFFIGITCAFPERPNLPIEALIFSSSFPGYSLIMYCRAGISRSS 324
Query: 1481 LSARC*WYCAMRR*LWRRTMPSNGARSPVISFRRVLFPAPLGPTNAILESRSTPKSRLLY 1302
S RC* AMRR*LWR TMPSNG RSPV+SFR VLFPAPLGPT+A LESRSTPKSR L
Sbjct: 323 FSVRC**N*AMRR*LWRLTMPSNGVRSPVMSFRSVLFPAPLGPTSATLESRSTPKSRFL* 144
Query: 1301 MRLSGVYPNLTSTNCSTGGGSLPTSVNLNTRTLSLTTFSVRPPR 1170
MRLSGVYPN+TS NCSTGGGSLPTSV NTR LSLTTFS RPPR
Sbjct: 143 MRLSGVYPNVTSANCSTGGGSLPTSVKRNTRILSLTTFSARPPR 12
Score = 204 bits (440), Expect(2) = 9e-057
Identities = 104/172 (60%), Positives = 116/172 (67%)
Frame = +2 / +2
Query: 1289 QIISYTRVLTLELILTLESHWLVPMVQGRAXXXXXXXXXXXH*MAWFGATITCALHSTIS 1468
+IIS+TR LTL L LT E HWLVPMVQG+A H MAW GATIT AL + I+
Sbjct: 131 RIISFTRTLTLVLTLTQELHWLVPMVQGKAHS*SS*LVTLLHWMAWSGATITYALLNFIN 310
Query: 1469 ILRTSWIWTCRLWLT**RNTLGPKKRRCELLLAGLAYQERRR*CQ*GIFLMGKGAVSSLH 1648
I SWIW C+L T** +TLG ++RR EL LA LA Q R R*CQ* I M + V SL
Sbjct: 311 ISLRSWIWICQLCST**GSTLGMRRRR*ELQLASLASQGRHR*CQ*KICQMDRRPVLSLL 490
Query: 1649 GWHIGSRNCYCSMSRQIIWTLRPLTPWRRH*MSGMVVWSW*AMISG*STRLL 1804
GWH GSR C+C MS QII TLR LTP RRH* +GM S *AM SG*STRLL
Sbjct: 491 GWHSGSRRCFCLMSPQIILTLRQLTPLRRH*RNGMGD*SS*AMTSG*STRLL 646
Score = 103 bits (219), Expect(3) = 3e-045
Identities = 52/97 (53%), Positives = 55/97 (56%)
Frame = -1 / -1
Query: 1804 EQPG*SA*NHGSPRPNHHPTHSVPPPGSQWSQCPNDLSAHRXXXXXXAYMPTMQR*HGSF 1625
EQPG*SA*+HGS HP SVPP GSQ SQC +DL AH+ A MP QR*HG
Sbjct: 646 EQPG*SA*SHGSRGLIPHPIPSVPPQGSQLSQCQDDLWAHQAKASAAA*MPAKQR*HGPS 467
Query: 1624 AHQKDSSLASPAPFLIGQTCXXXXXXXXXXXQGIPSS 1514
H D SLA P P L GQTC QG PSS
Sbjct: 466 VHLTDFSLALPVPSLRGQTCQLKLSSSPPHSQGTPSS 356
Score = 77.6 bits (163), Expect(3) = 3e-045
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = -1 / -1
Query: 1453 QCAGDCGAEPCHLMEQGHQS*ASEECSSLHHWDQPMRFXXXXXXXXXXSCI*D 1295
QC GDCGA PCH ME GHQS*AS C SLHHWDQP++ SC *D
Sbjct: 295 QCVGDCGA*PCHPME*GHQS*ASGVCFSLHHWDQPVQLLSQGQHQSQGSCK*D 137
Score = 64.3 bits (134), Expect(2) = 4e-093
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -3 / -3
Query: 1802 ATWLISLKSWLTKTKPPSHSFSASARE 1722
ATWLISLKSWLT+T PPSHSFSASARE
Sbjct: 644 ATWLISLKSWLTRTNPPSHSFSASARE 564
Score = 35.9 bits (72), Expect(3) = 3e-045
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1 / -1
Query: 1237 CQHL*T*TLELCP*QPSR*DHLA 1169
CQHL*+ T E C *QPS+ DHLA
Sbjct: 79 CQHL*SGTPESCH*QPSQQDHLA 11
Score = 32.7 bits (65), Expect(2) = 9e-057
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +2 / +2
Query: 1172 EVVSPRRLLGTEF*CSGLQMLAN 1240
EVV RRL T F CS LQMLAN
Sbjct: 14 EVVLLRRLSMTRFWCSALQMLAN 82
>gb|CN815185.1|CN815185 HRO4506_G12_M24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_G12_M24, mRNA sequence
Length = 712
Score = 182 bits (393), Expect = 1e-046
Identities = 74/193 (38%), Positives = 119/193 (61%)
Frame = +1 / +1
Query: 1132 QAQSKEKTLAKMERGGLTEKVVRDRVLVFRFTDVGKLPPPVLQFVEVKFGYTPDNLIYKS 1311
+A + + ++ + + E+++ D VF+F L PP+L+ + +FGY+ D ++ K
Sbjct: 133 RAALAQSKIKELAKMEIVEEIIEDPAYVFKFPCAENLDPPLLKIEDGEFGYSADKILLKD 312
Query: 1312 LDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLAPLDGMVRRHNHLRIAQYHQHLADKLDL 1491
+ FG+D+ SRIA+VG NG GKSTLLKL+ G++ G R++ LR + QH D+LDL
Sbjct: 313 IQFGIDMGSRIAIVGANGCGKSTLLKLLNGEIQLNQGRQFRNSRLRTTIFTQHFMDQLDL 492
Query: 1492 DMPALAYMMKEYPGTEEEKMRAAVGRFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQ 1671
+ + +YPG + E +R +G FG++G + P LS GQ+SRV FA + +P
Sbjct: 493 SLSPVEQFQLKYPGHKAEFIRCHLGGFGVTGDMGIRPQHLLSGGQKSRVAFALSVWNKPH 672
Query: 1672 LLLLDEPTNHLDI 1710
+++LDEPTNHLD+
Sbjct: 673 VMILDEPTNHLDV 711
>gb|CN815954.1|CN815954 HRO4515_C09_F17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_C09_F17, mRNA sequence
Length = 537
Score = 97.3 bits (206), Expect = 8e-021
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +1 / +2
Query: 1603 MRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF 1782
M LS GQ+SRV FA + +++P ++LLDEP+NHLD++ +++L + L + GG+++VSHD
Sbjct: 14 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLIFQGGVLMVSHDE 193
Query: 1783 RLINQVAQEIWVCENQAVTRWEGDIMDFKAHL 1878
LI E+W + V +EG D+K L
Sbjct: 194 HLITGSVDELWAVTDGKVAPFEGTFKDYKKML 289
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 23,605,341
Number of Sequences: 8143
Number of extensions: 353690
Number of successful extensions: 1759
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 778281696
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)