TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820947.1|CN820947 HRO4421_G08_M15ZS5 Lib AA069E1X Aven... 154 3e-038
>gb|CN820947.1|CN820947 HRO4421_G08_M15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G08_M15, mRNA
sequence
Length = 733
Score = 154 bits (330), Expect(2) = 3e-038
Identities = 65/95 (68%), Positives = 80/95 (84%)
Frame = +1 / +1
Query: 1708 FRPPSPAPSYTEKDVLSSMLRRLGELEGRVQVLETKPSEMPFEKEELLNAAVRRVDALEA 1887
FRPPSP+P + E D+ +L+RL ELE +VQ L+ KPSEMP EKEELLNAAVRRVDALEA
Sbjct: 349 FRPPSPSPGFAESDLFPLVLQRLAELEEKVQTLQEKPSEMPCEKEELLNAAVRRVDALEA 528
Query: 1888 ELISTKKALYDALMRQDELLAYIDRQELIKFRKKK 1992
ELI TKKAL++AL+RQ+ELLAY+DR+ + K +KKK
Sbjct: 529 ELIVTKKALHEALIRQEELLAYVDRKTIAKAQKKK 633
Score = 25.4 bits (49), Expect(2) = 3e-038
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 1423 EENIPVVDKVVDDGW 1467
E ++P+VDK VD W
Sbjct: 67 EYDVPIVDKAVDATW 111
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 26,632,602
Number of Sequences: 8143
Number of extensions: 409685
Number of successful extensions: 1972
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 46
effective length of database: 1,192,909
effective search space used: 881559751
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)