TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= F5H
(1360 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 65 1e-030
gb|CN816022.1|CN816022 HRO4516_A08_B16ZS5 Lib AA071E1X Aven... 45 1e-012
gb|CN815674.1|CN815674 HRO4514_C07_E14ZS5 Lib AA071E1X Aven... 45 2e-008
gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Aven... 52 2e-007
gb|CN814743.1|CN814743 HRO4502_A06_A12ZS5 Lib AA071E1X Aven... 46 1e-005
gb|CN820477.1|CN820477 HRO4419_G10_N19ZS5 Lib AA069E1X Aven... 37 2e-005
gb|CN820806.1|CN820806 HRO4420_B01_D02ZS5 Lib AA069E1X Aven... 40 9e-004
emb|A47134.1| Sequence 9 from Patent WO9529246 37 0.008
gb|CN817738.1|CN817738 HRO4461_E05_J09ZS5 Lib AA070E1X Aven... 33 0.14
gb|CN817175.1|CN817175 HRO4459_H10_O19ZS5 Lib AA070E1X Aven... 32 0.20
gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Aven... 32 0.20
gb|CN817863.1|CN817863 HRO4453_E05_J09ZS5 Lib AA070E1X Aven... 32 0.20
gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Aven... 32 0.20
gb|CN818759.1|CN818759 HRO4468_C09_E18ZS5 Lib AA070E1X Aven... 32 0.20
gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Aven... 32 0.20
gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Aven... 32 0.20
gb|CN180770.1|CN180770 As02_cdo1385_C ITEC CDO Oat cDNA Lib... 32 0.27
gb|CN180773.1|CN180773 As02_cdo1473_C ITEC CDO Oat cDNA Lib... 32 0.27
gb|CN817321.1|CN817321 HRO4465_A07_B13ZS5 Lib AA070E1X Aven... 31 0.37
gb|CN817384.1|CN817384 HRO4465_E06_J11ZS5 Lib AA070E1X Aven... 31 0.37
gb|CN818189.1|CN818189 HRO4471_A05_A09ZS5 Lib AA070E1X Aven... 31 0.37
gb|CN818965.1|CN818965 HRO4474_F02_L04ZS5 Lib AA070E1X Aven... 31 0.37
gb|CN821373.1|CN821373 HRO4424_F01_L02ZS5 Lib AA069E1X Aven... 29 1.3
gb|AY083679.1| Avena sativa clone OP10rc receptor kinase ge... 29 1.6
gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, com... 25 1.7
gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene... 29 1.8
gb|CN818430.1|CN818430 HRO4460_F07_K14ZS5 Lib AA070E1X Aven... 29 2.5
gb|CN818562.1|CN818562 HRO4466_H05_P10ZS5 Lib AA070E1X Aven... 29 2.5
gb|CN820307.1|CN820307 HRO4417_H05_O09ZS5 Lib AA069E1X Aven... 29 2.5
gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Aven... 28 3.4
gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Aven... 28 3.4
gb|CN819178.1|CN819178 HRO4451_A10_A19ZS5 Lib AA070E1X Aven... 28 3.4
gb|CN821131.1|CN821131 HRO4427_H02_P03ZS5 Lib AA069E1X Aven... 28 3.4
gb|CN821323.1|CN821323 HRO4424_A06_B12ZS5 Lib AA069E1X Aven... 28 3.4
dbj|AB000707.1| Avena sativa gene for auxin-binding protein... 28 3.4
gb|CN817468.1|CN817468 HRO4466_B03_D06ZS5 Lib AA070E1X Aven... 28 4.7
gb|CN817506.1|CN817506 HRO4466_D09_H18ZS5 Lib AA070E1X Aven... 28 4.7
gb|CN818089.1|CN818089 HRO4472_A01_A02ZS5 Lib AA070E1X Aven... 28 4.7
gb|CN818105.1|CN818105 HRO4471_G06_M11ZS5 Lib AA070E1X Aven... 28 4.7
gb|CN818512.1|CN818512 HRO4466_F01_L02ZS5 Lib AA070E1X Aven... 28 4.7
gb|CN820809.1|CN820809 HRO4420_B04_D08ZS5 Lib AA069E1X Aven... 28 4.7
gb|CN820814.1|CN820814 HRO4420_B09_D18ZS5 Lib AA069E1X Aven... 28 4.7
gb|U21747.1|AFU21747 Avena fatua aldose reductase-related p... 28 4.7
gb|BE439296.1|BE439296 CDO675_WHE05E02F ITEC CDO Oat cDNA L... 27 6.5
gb|CN817829.1|CN817829 HRO4453_E10_J19ZS5 Lib AA070E1X Aven... 27 6.5
gb|CN817905.1|CN817905 HRO4462_C06_F12ZS5 Lib AA070E1X Aven... 27 6.5
gb|CN818325.1|CN818325 HRO4457_A12_B23ZS5 Lib AA070E1X Aven... 27 6.5
gb|U11693.1|ASU11693 Avena sativa victorin binding protein ... 25 7.5
gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativ... 27 8.9
gb|CN815859.1|CN815859 HRO4511_C08_F15ZS5 Lib AA071E1X Aven... 27 8.9
gb|CN816187.1|CN816187 HRO4517_H09_O17ZS5 Lib AA071E1X Aven... 27 8.9
gb|CN817435.1|CN817435 HRO4465_H03_P05ZS5 Lib AA070E1X Aven... 27 8.9
gb|CN817955.1|CN817955 HRO4459_D07_G13ZS5 Lib AA070E1X Aven... 27 8.9
gb|CN819950.1|CN819950 HRO4409_A07_A13ZS5 Lib AA069E1X Aven... 27 8.9
gb|CN821346.1|CN821346 HRO4424_C07_F14ZS5 Lib AA069E1X Aven... 27 8.9
gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRK... 27 8.9
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 64.8 bits (135), Expect(4) = 1e-030
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2 / +1
Query: 911 EAAGLDFKGGCFEFLPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDGMKPSELD 1087
E +++ G F+F PFGSGRR CPG +E+A+A L + F+W LPDG + L+
Sbjct: 373 ENNNVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGERVDMLE 549
Score = 48.7 bits (100), Expect(4) = 1e-030
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2 / +1
Query: 767 ETAGDCVVGGYSVPRGSRVMVNVWAIGRHRASWKDADAFRPSRF 898
ET DC + GY++P+G+ + +N +AI W + F P RF
Sbjct: 241 ETREDCEIMGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERF 372
Score = 48.3 bits (99), Expect(4) = 1e-030
Identities = 16/45 (35%), Positives = 34/45 (75%)
Frame = +2 / +1
Query: 542 DVMFGGTETVASAIEWAMAEMMHSPDDLRRLQQELADVVGLDRNV 676
D+ TET ++A+EW M+E++++P+ + ++Q+E+ +V+G D+ V
Sbjct: 10 DLFGAATETTSTALEWTMSELINNPEVMAKVQKEVREVLGKDQVV 144
Score = 39.6 bits (80), Expect = 0.001
Identities = 20/39 (51%), Positives = 22/39 (56%)
Frame = -2 / -2
Query: 1065 PSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKGRN 949
PSGS Q K +A A S +PGH RRPEPKG N
Sbjct: 527 PSGSFQSKW*RRFAKAISMVDVAKNIPGHIRRPEPKGVN 411
Score = 22.6 bits (43), Expect(4) = 1e-030
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2 / +1
Query: 674 VNESDLDKLPFLKCVIKE 727
+ SDL +L +++ VIKE
Sbjct: 145 ITNSDLGELHYMRMVIKE 198
>gb|CN816022.1|CN816022 HRO4516_A08_B16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A08_B16, mRNA sequence
Length = 602
Score = 44.6 bits (91), Expect(2) = 1e-012
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2 / -1
Query: 950 FLPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDGMKPSEL 1084
F+ F +GRR C +LG + +L GF WS P G+ P +L
Sbjct: 428 FISFSTGRRGCVAASLGTAMCVMLFGRLLQGFTWSNPAGLVPIDL 294
Score = 43.2 bits (88), Expect(2) = 1e-012
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2 / -1
Query: 779 DCVVGGYSVPRGSRVMVNVWAIGRHRASWKDADAFRPSR 895
D V GY VP+GS V+++ +GR+ A W D F+P R
Sbjct: 602 DTNVAGYRVPKGSHVILSRTGLGRNPAIWDDPLCFKPER 486
Score = 30.4 bits (60), Expect(2) = 2e-004
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -2 / +1
Query: 894 RDGRNASASFHEARWRPMAHTLTMTREPLGTE*PPT 787
R G S S A +RP L MT PLGT *P T
Sbjct: 487 RSGLKHSGSSQIAGFRPSPVRLRMTWLPLGTR*PAT 594
Score = 29.5 bits (58), Expect(2) = 2e-004
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2 / +1
Query: 1080 SEGFMPSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKGRN 949
S G P+G Q+ PC S + + PS H RRP K N
Sbjct: 298 SMGTKPAGLLQVNPCNSRPKSITHMAVPSDAATHPRRPVLKEMN 429
>gb|CN815674.1|CN815674 HRO4514_C07_E14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C07_E14, mRNA sequence
Length = 631
Score = 44.6 bits (91), Expect(2) = 2e-008
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2 / -1
Query: 950 FLPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDGMKPSEL 1084
F+ F +GRR C +LG + +L GF WS P G+ P +L
Sbjct: 490 FISFSTGRRGCVAASLGTAMCVMLFGRLLQGFTWSNPAGLVPIDL 356
Score = 29.5 bits (58), Expect = 1.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2 / +3
Query: 1080 SEGFMPSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKGRN 949
S G P+G Q+ PC S + + PS H RRP K N
Sbjct: 360 SMGTKPAGLLQVNPCNSRPKSITHMAVPSDAATHPRRPVLKEMN 491
Score = 29.0 bits (57), Expect(2) = 2e-008
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2 / -1
Query: 812 GSRVMVNVWAIGRHRASWKDADAFRPSR 895
GS V+++ +GR+ A W D F+P R
Sbjct: 631 GSHVILSRTGLGRNPAIWDDPLCFKPER 548
>gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_D10_H20, mRNA
sequence
Length = 379
Score = 52.4 bits (108), Expect = 2e-007
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2 / +3
Query: 953 LPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDGMKPSELDMGDVFGLTAPRATRL 1132
+PFGSGRR CPG A+E+ +A L + F+W LP K ++ + L
Sbjct: 3 VPFGSGRRICPGINFANVAVEMMLANLVYHFDWELPAEKKEVDMKEVFSLSIRRKEKLHL 182
Query: 1133 YAVPTP 1150
VP P
Sbjct: 183 VPVPRP 200
Score = 30.4 bits (60), Expect = 0.70
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2 / -1
Query: 1080 SEGFMPSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKG 955
S F +GS Q K +A+ S+A +PG RP+P G
Sbjct: 130 STSFFSAGSSQSKWYTRFASIISTATFAKFMPGQILRPDPNG 5
>gb|CN814743.1|CN814743 HRO4502_A06_A12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A06_A12, mRNA sequence
Length = 350
Score = 46.0 bits (94), Expect = 1e-005
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +3
Query: 1007 ALELAVAQLAHGFNWSLPDGMKPSELDMGDVFGLTAPRATRLY 1135
++++ +A L + F+W LP G KP E+DM + GLT + LY
Sbjct: 24 SMDIVLASLLYHFDWKLPRGGKPDEVDMTEEMGLTVRQKNDLY 152
>gb|CN820477.1|CN820477 HRO4419_G10_N19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_G10_N19, mRNA
sequence
Length = 573
Score = 37.3 bits (75), Expect(2) = 2e-005
Identities = 18/86 (20%), Positives = 33/86 (38%)
Frame = +2 / +3
Query: 665 DRNVNESDLDKLPFLKCVIKETXXXXXXXXXXXXETAGDCVVGGYSVPRGSRVMVNVWAI 844
D + + + F VI E D + GY++P+GS++M++ A
Sbjct: 87 DSEITWEEYKSMKFTSHVIHEALRLASIAPVMFRRAIEDVQIKGYTIPKGSKIMISPAAT 266
Query: 845 GRHRASWKDADAFRPSRFTPEGEAAG 922
+ ++D F P + E G
Sbjct: 267 HLNPKIYEDPHVFNPWMWQNSAEPVG 344
Score = 26.3 bits (51), Expect(2) = 2e-005
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +2 / +3
Query: 947 EFLPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDG 1066
+F+ FG G R C G L + + + L + W G
Sbjct: 357 DFMAFGGGVRLCVGADLSKLQMSIFLHCLVTKYRWKTIKG 476
>gb|CN820806.1|CN820806 HRO4420_B01_D02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_B01_D02, mRNA
sequence
Length = 445
Score = 40.0 bits (81), Expect = 9e-004
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +2 / +1
Query: 665 DRNVNESDLDKLPFLKCVIKETXXXXXXXXXXXXETAGDCVVGGYSVPRGSRVMVNVWAI 844
D + + + F VI E D + GY++P+GS++M++ A
Sbjct: 154 DSEITWEEYKSMKFTSHVIHEALRLASIAPVMFRRAIEDVQIKGYTIPKGSKIMISPAAT 333
Query: 845 GRHRASWKDADAFRPSRFTPEGEAAG 922
+ ++D F P R+ E G
Sbjct: 334 HLNPKIYEDPHVFNPWRWQNSAEPVG 411
>emb|A47134.1| Sequence 9 from Patent WO9529246
Length = 1926
Score = 36.8 bits (74), Expect = 0.008
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / +3
Query: 56 NSCSPGDPLVLERP 15
N CSPGDPLVLERP
Sbjct: 1860 NXCSPGDPLVLERP 1901
Score = 32.2 bits (64), Expect = 0.20
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 14 AAALELVDPPGCRN 55
AAALEL DPPGC N
Sbjct: 1902 AAALELXDPPGCXN 1861
>gb|CN817738.1|CN817738 HRO4461_E05_J09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E05_J09, mRNA sequence
Length = 260
Score = 32.7 bits (65), Expect = 0.14
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2 / -3
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKAA 169
T L +P F S + + ++WSSPSRV K++
Sbjct: 102 TVLVSPKYFSASAGLLILAAWSSPSRVSKSS 10
>gb|CN817175.1|CN817175 HRO4459_H10_O19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H10_O19, mRNA sequence
Length = 389
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 223 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 134
>gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G07_N13, mRNA sequence
Length = 403
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 246 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 157
>gb|CN817863.1|CN817863 HRO4453_E05_J09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_E05_J09, mRNA sequence
Length = 371
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 220 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 131
>gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_F11_K21, mRNA sequence
Length = 452
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 313 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 224
>gb|CN818759.1|CN818759 HRO4468_C09_E18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C09_E18, mRNA sequence
Length = 320
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 181 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 92
>gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_F09_L18, mRNA
sequence
Length = 417
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / +2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 152 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 241
>gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G11_M22, mRNA
sequence
Length = 498
Score = 32.2 bits (64), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2 / -2
Query: 261 TTLKAPNSFENSCRMAMNSSWSSPSRVPKA 172
T L +P F S + + ++WSSPSRV K+
Sbjct: 329 TVLVSPKYFSASAGLLILAAWSSPSRVSKS 240
>gb|CN180770.1|CN180770 As02_cdo1385_C ITEC CDO Oat cDNA Library Avena sativa cDNA clone
As02_cdo1385, mRNA sequence
Length = 1243
Score = 31.8 bits (63), Expect = 0.27
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2 / +2
Query: 794 GYSVPRGSRVMVNVWAIGRHRASWKDADAFRPSRF 898
GY++P+GS++M++ A + ++D F P R+
Sbjct: 362 GYTIPKGSKIMISPAATHLNPKIYEDPHVFNPWRW 466
>gb|CN180773.1|CN180773 As02_cdo1473_C ITEC CDO Oat cDNA Library Avena sativa cDNA clone
As02_cdo1473, mRNA sequence
Length = 1243
Score = 31.8 bits (63), Expect = 0.27
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2 / +2
Query: 794 GYSVPRGSRVMVNVWAIGRHRASWKDADAFRPSRF 898
GY++P+GS++M++ A + ++D F P R+
Sbjct: 362 GYTIPKGSKIMISPAATHLNPKIYEDPHVFNPWRW 466
>gb|CN817321.1|CN817321 HRO4465_A07_B13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_A07_B13, mRNA sequence
Length = 451
Score = 31.3 bits (62), Expect = 0.37
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2 / +2
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RPS P RP P R
Sbjct: 35 PCLSMTNAPSWRRRPSTCPSRTSRPTPSSR 124
>gb|CN817384.1|CN817384 HRO4465_E06_J11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_E06_J11, mRNA sequence
Length = 575
Score = 31.3 bits (62), Expect = 0.37
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2 / +2
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RPS P RP P R
Sbjct: 110 PCLSMTNAPSWRRRPSTCPSRTSRPTPSSR 199
>gb|CN818189.1|CN818189 HRO4471_A05_A09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_A05_A09, mRNA sequence
Length = 532
Score = 31.3 bits (62), Expect = 0.37
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2 / +2
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RPS P RP P R
Sbjct: 95 PCLSMTNAPSWRRRPSTCPSRTSRPTPSSR 184
>gb|CN818965.1|CN818965 HRO4474_F02_L04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_F02_L04, mRNA sequence
Length = 495
Score = 31.3 bits (62), Expect = 0.37
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2 / +1
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RPS P RP P R
Sbjct: 49 PCLSMTNAPSWRRRPSTCPSRTSRPTPSSR 138
>gb|CN821373.1|CN821373 HRO4424_F01_L02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_F01_L02, mRNA
sequence
Length = 694
Score = 29.5 bits (58), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 1358 FFFFFLRIKKIDNGCLQH 1305
FFFFFLR+ K + C H
Sbjct: 681 FFFFFLRVIKWQSNCAHH 628
>gb|AY083679.1| Avena sativa clone OP10rc receptor kinase gene cluster, complete
sequence
Length = 12232
Score = 29.0 bits (57), Expect(2) = 1.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2 / -2
Query: 1254 RKAPNSYPRTPHPPEGTMVMAVARAWRQ 1171
RKA SYP PHP G+ A A +Q
Sbjct: 9780 RKAYGSYPIDPHPSPGSAPTAAAGRRKQ 9697
Score = 27.2 bits (53), Expect = 6.5
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2 / +1
Query: 1104 PKTSPMSSSEGFMPSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKGRN 949
P P S + S + +S + SSS RPS H RP P R+
Sbjct: 11332 PSGRPSPVSTARTRTTSRRSSAASSSISTSSSPTRPSLATPHPSRPPPTRRH 11487
Score = 24.0 bits (46), Expect(2) = 1.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1 / -1
Query: 700 ELVQVRLVHVPVQAHDVGELLLQP 629
++V+ RLV + Q H + E ++ P
Sbjct: 6841 KIVKERLVEIQFQTHGIRERIIYP 6770
>gb|J05486.1|ASTSSPA A.sativa seed storage protein gene, complete cds
Length = 1548
Score = 25.4 bits (49), Expect(2) = 1.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1 / -3
Query: 1153 PGRRHGVEPRGARRGEAEDVAHV 1085
PGRR+G GA RG A V +
Sbjct: 853 PGRRYGWLGTGAARGSAPAVGSI 785
Score = 24.9 bits (48), Expect(2) = 1.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2 / -2
Query: 297 CRSIQLSHGRKSTTLKAPNSFENSCRMAMNSSW 199
CRSI + HG S L S +N+C + W
Sbjct: 395 CRSIYICHGIVSFHLCICFSLKNACMLLELIIW 297
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete
sequence
Length = 13990
Score = 29.0 bits (57), Expect(2) = 1.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2 / -2
Query: 1254 RKAPNSYPRTPHPPEGTMVMAVARAWRQ 1171
RKA SYP PHP G+ A A +Q
Sbjct: 9705 RKAYGSYPIDPHPSPGSAPTAAAGRRKQ 9622
Score = 27.6 bits (54), Expect = 4.7
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2 / +1
Query: 1110 VRPKTSPMSSSEGFMPSGSDQLKPCASWATASSSAYRPSAVPGHERRPEPKGRN 949
V P P S + S + +S + SSS RPS H RP P R+
Sbjct: 11248 VDPVRRPSPVSTARTRTTSRRSSAASSSISTSSSPTRPSLATPHPSRPPPTRRH 11409
Score = 24.0 bits (46), Expect(2) = 1.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1 / -1
Query: 700 ELVQVRLVHVPVQAHDVGELLLQP 629
++V+ RLV + Q H + E ++ P
Sbjct: 6766 KIVKERLVEIQFQTHGIRERIIYP 6695
>gb|CN818430.1|CN818430 HRO4460_F07_K14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F07_K14, mRNA sequence
Length = 482
Score = 28.6 bits (56), Expect = 2.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2 / +2
Query: 1269 EKRRQRKAPNSYPRTPHPPEGTMVMAVARA 1180
E +R +P RTPH P T A+ RA
Sbjct: 89 EGETRRSSPRRTSRTPHRPRATSPSALPRA 178
>gb|CN818562.1|CN818562 HRO4466_H05_P10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H05_P10, mRNA sequence
Length = 649
Score = 28.6 bits (56), Expect = 2.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2 / +1
Query: 1269 EKRRQRKAPNSYPRTPHPPEGTMVMAVARA 1180
E +R +P RTPH P T A+ RA
Sbjct: 256 EGETRRSSPRRTSRTPHRPRATSPSALPRA 345
>gb|CN820307.1|CN820307 HRO4417_H05_O09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_H05_O09, mRNA
sequence
Length = 823
Score = 28.6 bits (56), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1 / -3
Query: 1222 TPTRGDDGNGSRPRMASVQGAVEPGRRHG 1136
+PTRG++G M +V A++ GR+ G
Sbjct: 578 SPTRGEEGTSPNIWMETVDIAIDSGRKLG 492
>gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D08_H15, mRNA sequence
Length = 836
Score = 28.1 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2 / +2
Query: 944 FEFLPFGSGRRSCPGTALGLYALELAVA 1027
F F+PF G R C G L +A+A
Sbjct: 422 FRFIPFSGGPRKCVGDQFALLEAIVALA 505
>gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_E07_XXX, mRNA sequence
Length = 597
Score = 28.1 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2 / +2
Query: 944 FEFLPFGSGRRSCPGTALGLYALELAVA 1027
F F+PF G R C G L +A+A
Sbjct: 116 FRFIPFSGGPRKCVGDQFALLEAIVALA 199
>gb|CN819178.1|CN819178 HRO4451_A10_A19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_A10_A19, mRNA sequence
Length = 829
Score = 28.1 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2 / +1
Query: 944 FEFLPFGSGRRSCPGTALGLYALELAVA 1027
F F+PF G R C G L +A+A
Sbjct: 388 FRFIPFSGGPRKCVGDQFALLEAIVALA 471
>gb|CN821131.1|CN821131 HRO4427_H02_P03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_H02_P03, mRNA
sequence
Length = 380
Score = 28.1 bits (55), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 1113 AVRPKTSPMSSSEGFMPSGSDQLKP 1039
A R + SP SSS +PS SD+L P
Sbjct: 29 ASRSRRSPRSSSCPLLPSTSDRLPP 103
>gb|CN821323.1|CN821323 HRO4424_A06_B12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A06_B12, mRNA
sequence
Length = 860
Score = 28.1 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2 / +2
Query: 944 FEFLPFGSGRRSCPGTALGLYALELAVA 1027
F F+PF G R C G L +A+A
Sbjct: 647 FRFIPFSGGPRKCVGDQFALLEAIVALA 730
>dbj|AB000707.1| Avena sativa gene for auxin-binding protein, complete cds
Length = 801
Score = 28.1 bits (55), Expect = 3.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2 / -2
Query: 14 AAALELVDPPG 46
AAALELVDPPG
Sbjct: 38 AAALELVDPPG 6
>gb|CN817468.1|CN817468 HRO4466_B03_D06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_B03_D06, mRNA sequence
Length = 818
Score = 27.6 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +2
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RP P RP P R
Sbjct: 179 PCLSMTNAPSWRRRP*TCPSRTSRPTPSSR 268
>gb|CN817506.1|CN817506 HRO4466_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_D09_H18, mRNA sequence
Length = 478
Score = 27.6 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +1
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RP P RP P R
Sbjct: 40 PCLSMTNAPSWRRRP*TCPSRTSRPTPSSR 129
>gb|CN818089.1|CN818089 HRO4472_A01_A02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_A01_A02, mRNA sequence
Length = 709
Score = 27.6 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +2
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RP P RP P R
Sbjct: 245 PCLSMTNAPSWRRRP*TCPSRTSRPTPSSR 334
>gb|CN818105.1|CN818105 HRO4471_G06_M11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_G06_M11, mRNA sequence
Length = 628
Score = 27.6 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +3
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RP P RP P R
Sbjct: 171 PCLSMTNAPSWRRRP*TCPSRTSRPTPSSR 260
>gb|CN818512.1|CN818512 HRO4466_F01_L02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_F01_L02, mRNA sequence
Length = 543
Score = 27.6 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +3
Query: 1041 PCASWATASSSAYRPSAVPGHERRPEPKGR 952
PC S A S RP P RP P R
Sbjct: 105 PCLSMTNAPSWRRRP*TCPSRTSRPTPSSR 194
>gb|CN820809.1|CN820809 HRO4420_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_B04_D08, mRNA
sequence
Length = 695
Score = 27.6 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1 / -1
Query: 1222 TPTRGDDGNGSRPRMASVQGAVEPGRRHG 1136
+PTRG++G M +V A++ GR+ G
Sbjct: 365 SPTRGEEGTSPNI*METVDIAIDNGRKLG 279
>gb|CN820814.1|CN820814 HRO4420_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_B09_D18, mRNA
sequence
Length = 497
Score = 27.6 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1 / -3
Query: 1222 TPTRGDDGNGSRPRMASVQGAVEPGRRHG 1136
+PTRG++G M +V A++ GR+ G
Sbjct: 135 SPTRGEEGTSPNI*METVDIAIDNGRKLG 49
>gb|U21747.1|AFU21747 Avena fatua aldose reductase-related protein mRNA, complete cds
Length = 1260
Score = 27.6 bits (54), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1122 ARGAVRPKTSPMSSSEGFMPSG 1057
+R + RP+ S SSS+G PSG
Sbjct: 682 SRASCRPRKSYRSSSQGAFPSG 617
>gb|BE439296.1|BE439296 CDO675_WHE05E02F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO675_WHE05E02, mRNA sequence
Length = 271
Score = 27.2 bits (53), Expect = 6.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1 / -2
Query: 259 RRLPAVAELDGPAGHQPPPPR 321
R LP +L P PPPPR
Sbjct: 129 RFLPGCPKLGSPESFSPPPPR 67
>gb|CN817829.1|CN817829 HRO4453_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_E10_J19, mRNA sequence
Length = 420
Score = 27.2 bits (53), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1 / -1
Query: 733 ERLLDDALEEGELVQVRLVHVPVQAHDVGELLLQPAQVVGA 611
+RL +EE LV + H PV+ V + L+ A VVGA
Sbjct: 207 QRLEGLLIEEVRLVHLGSPHEPVELGHVVDELVGDADVVGA 85
>gb|CN817905.1|CN817905 HRO4462_C06_F12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_C06_F12, mRNA sequence
Length = 416
Score = 27.2 bits (53), Expect = 6.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 1254 RKAPNSYPRTPHPPEGTMVMAVARA 1180
R +P RTPH P T A+ RA
Sbjct: 16 RSSPRRTSRTPHRPRATSPSALPRA 90
>gb|CN818325.1|CN818325 HRO4457_A12_B23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_A12_B23, mRNA sequence
Length = 349
Score = 27.2 bits (53), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 780 TASWAATPCPGAPASWSTCG 839
++S +TPC +P+SWS+ G
Sbjct: 16 SSSAPSTPCRCSPSSWSSSG 75
>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds
Length = 3408
Score = 24.9 bits (48), Expect(2) = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1 / -2
Query: 1270 PLKNMPGRCCRVCCRQ 1317
P ++ PGR C C R+
Sbjct: 614 PARSRPGRACTACTRR 567
Score = 24.0 bits (46), Expect(2) = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3 / -2
Query: 783 ASWAATPCPGAPASWS 830
A W+A+PC WS
Sbjct: 1217 APWSASPCGALACRWS 1170
>gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativa cDNA clone JMT4_G11 5', mRNA
sequence
Length = 396
Score = 26.7 bits (52), Expect = 8.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1 / -3
Query: 256 RRRLPAVAELDGPAGHQPPPPRRT 327
R PA A D PA PP RRT
Sbjct: 190 RTAAPASASRDRPAASAAPPRRRT 119
>gb|CN815859.1|CN815859 HRO4511_C08_F15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C08_F15, mRNA sequence
Length = 353
Score = 26.7 bits (52), Expect = 8.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / -2
Query: 1358 FFFFFLRIKKI 1326
FFFFFLRI KI
Sbjct: 352 FFFFFLRISKI 320
>gb|CN816187.1|CN816187 HRO4517_H09_O17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H09_O17, mRNA sequence
Length = 376
Score = 26.7 bits (52), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2 / +1
Query: 1122 ARGAVRPKTSPMSSSEGFMPSGSDQLKPCASWATASSS 1009
ARG++ S SS++ P S++ C+S +++SSS
Sbjct: 7 ARGSLPSPLSVSSSNDSTPPPSSNKRAICSSKSSSSSS 120
>gb|CN817435.1|CN817435 HRO4465_H03_P05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_H03_P05, mRNA sequence
Length = 272
Score = 26.7 bits (52), Expect = 8.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / -2
Query: 1358 FFFFFLRIKKIDN 1320
FFFFFLR K+ D+
Sbjct: 271 FFFFFLRTKRFDS 233
>gb|CN817955.1|CN817955 HRO4459_D07_G13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_D07_G13, mRNA sequence
Length = 795
Score = 26.7 bits (52), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2 / -1
Query: 1065 PSGSDQLKPCASWATASSSAYRPSAVP 985
P+G + PC +WA A S R A P
Sbjct: 102 PAGCSRRSPC*AWAGACRSRSRSPARP 22
>gb|CN819950.1|CN819950 HRO4409_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A07_A13, mRNA
sequence
Length = 594
Score = 26.7 bits (52), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1 / -1
Query: 1225 PTPTRGDDGNGSRPRMASVQGAVEPGRRH 1139
PT + GD+G R+ S + A+ GR+H
Sbjct: 360 PTESAGDNGPSLSSRVVSYR*AI*AGRQH 274
>gb|CN821346.1|CN821346 HRO4424_C07_F14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C07_F14, mRNA
sequence
Length = 711
Score = 26.7 bits (52), Expect = 8.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1 / -2
Query: 268 PAVAELDGPAGHQPPPPRR 324
P E +G HQPPP RR
Sbjct: 95 PDGGEAEGADQHQPPPERR 39
>gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRKY3 (wrky3) mRNA, complete cds
Length = 1206
Score = 26.7 bits (52), Expect = 8.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1 / +3
Query: 259 RRLPAVAELDGPAGHQPPPPRRTIRAGPV 345
RR P VA+ GP+ +P P R + P+
Sbjct: 330 RRGPVVAQSQGPSVSEPAPVRTASSSRPM 416
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,026,907
Number of Sequences: 8143
Number of extensions: 101467
Number of successful extensions: 975
Number of sequences better than 10.0: 61
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 493351560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)