TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Aven... 85 2e-030
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 79 5e-030
gb|CN818757.1|CN818757 HRO4468_C07_E14ZS5 Lib AA070E1X Aven... 84 6e-026
gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Aven... 78 3e-016
gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Aven... 80 1e-015
gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Aven... 68 3e-012
gb|CN819688.1|CN819688 HRO4403_A04_B07ZS5 Lib AA069E1X Aven... 54 3e-009
gb|CN820509.1|CN820509 HRO4413_B11_C21ZS5 Lib AA069E1X Aven... 38 0.005
gb|CN815073.1|CN815073 HRO4505_E10_I19ZS5 Lib AA071E1X Aven... 30 0.75
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 30 1.0
gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Aven... 27 1.5
gb|AI978362.1|AI978362 CDO251.F Oat Etiolated Leaf cDNA Lib... 29 2.0
gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Aven... 25 2.4
gb|CN818598.1|CN818598 HRO4467_B06_C11ZS5 Lib AA070E1X Aven... 29 2.7
gb|CN818932.1|CN818932 HRO4473_A03_XXXZS5 Lib AA070E1X Aven... 29 2.7
gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativ... 28 3.7
gb|CN815130.1|CN815130 HRO4506_B12_C24ZS5 Lib AA071E1X Aven... 28 5.1
gb|CN820107.1|CN820107 HRO4411_B09_D17ZS5 Lib AA069E1X Aven... 28 5.1
gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence cont... 28 5.1
gb|AY038013.1| Avena sativa isolate Pc68LrkC5 sequence cont... 28 5.1
gb|CN815345.1|CN815345 HRO4508_F07_L14ZS5 Lib AA071E1X Aven... 27 7.0
gb|CN820342.1|CN820342 HRO4418_C07_E14ZS5 Lib AA069E1X Aven... 27 7.0
gb|CN820389.1|CN820389 HRO4418_G09_M18ZS5 Lib AA069E1X Aven... 27 7.0
gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks o... 25 7.8
gb|CN817014.1|CN817014 HRO4527_C10_F19ZS5 Lib AA071E1X Aven... 27 9.6
gb|CN817791.1|CN817791 HRO4461_A11_B21ZS5 Lib AA070E1X Aven... 27 9.6
gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRK... 27 9.6
>gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_E01_I01, mRNA
sequence
Length = 717
Score = 85.4 bits (180), Expect(3) = 2e-030
Identities = 31/79 (39%), Positives = 49/79 (62%)
Frame = +3 / +1
Query: 744 NASTDHVMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDL 923
N S + ++K + GS++TY N + +++V+DVA AH+ YE P A+GRY E H +L
Sbjct: 457 NTSAEAILKLINGSSSTYPNFSFGWINVKDVALAHILAYEVPSANGRYCMVERVAHHSEL 636
Query: 924 CRVLAKLFPEYPVPTKCKD 980
+ K++P+ PV KC D
Sbjct: 637 VNFIHKMYPDIPVAHKCAD 693
Score = 54.7 bits (113), Expect(2) = 1e-010
Identities = 34/83 (40%), Positives = 36/83 (43%)
Frame = -2 / -2
Query: 979 SLHLVGTGYSGKSLARTRQRSPRCRVLSAQM*RPCAWGASYTRTCASATSLTCTYACAAF 800
S HL TG SG L S LS P A G SY R CA ATSLT +
Sbjct: 692 SAHLCATGMSGYILCMKLTSSEW*ATLSTMQYLPFADGTSYARICARATSLTFIHPKLKL 513
Query: 799 T*VVADPVRYFITWSVLAFTVGC 731
V DP+ F S L F VGC
Sbjct: 512 GYVEDDPLISFNIASALVFNVGC 444
Score = 50.1 bits (103), Expect(3) = 2e-030
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3 / +1
Query: 507 VVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQGAWEVAR 674
+V +S Y + P+ VD+T +S E C+ Q WY +KT+AE+ AW+ ++
Sbjct: 220 IVTSSMAAVGYNGKPKTPNVVVDETWFSHAELCEKGQQWYVLSKTLAEEAAWKFSK 387
Score = 40.9 bits (83), Expect = 5e-004
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3 / +1
Query: 417 VTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCW 587
V D +++PA+ GT V+ + A +KRV+ TSS+ V N V D W
Sbjct: 127 VKDPKAELLDPAVNGTLNVLRSCKKASIKRVIVTSSMAAVGYNGKPKTPNVVVDETW 297
Score = 30.9 bits (61), Expect(3) = 2e-030
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3 / +1
Query: 303 ALDGXXXXXXXXXXXXXXPQSLAEAFSGCDGVFHAASP 416
ALDG S +A GC+ VFH ASP
Sbjct: 1 ALDGAKDRLHLFKASLLEEGSFDDAIDGCECVFHTASP 114
Score = 30.4 bits (60), Expect(2) = 1e-010
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 415 GEAAWKTPSQPEKASAR 365
GEA WKT SQP AS++
Sbjct: 113 GEAVWKTHSQPSMASSK 63
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 78.5 bits (165), Expect(2) = 5e-030
Identities = 34/82 (41%), Positives = 49/82 (59%)
Frame = +3 / +3
Query: 438 MIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQ 617
+I PA+ GT + A +A VKRVV SS+ VY NP K +D+ WSD + C+ +
Sbjct: 36 IIAPAVTGTLNELKACYEAKVKRVVVVSSVSAVYNNPNWPKGKVLDEDNWSDEDLCRKNK 215
Query: 618 NWYCYAKTVAEQGAWEVARKRG 683
+WY +KT+AE+ A+ A K G
Sbjct: 216 DWYDLSKTLAEREAFAYAAKTG 281
Score = 68.4 bits (143), Expect(2) = 5e-030
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +3 / +3
Query: 744 NASTDHVMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDL 923
N S+ ++ Y G T N + V VRDVA+A + YE A GRYIC+ S + DL
Sbjct: 342 NTSSKVLLSYFKGEHETVENKYRNLVDVRDVADAILLAYENAEASGRYICSSSPIKASDL 521
Query: 924 CRVLAKLFPEYPVP 965
+L L+P YP P
Sbjct: 522 ISILKTLYPTYPYP 563
Score = 43.7 bits (89), Expect(2) = 1e-011
Identities = 29/64 (45%), Positives = 33/64 (51%)
Frame = -2 / -2
Query: 649 SATVLA*QYQFWVFLQYSRSLQQVSSTGLLGSR*GFMYTVPMEDVNTTRFTPASSAAAIT 470
SA+VL YQ FLQ S S Q SS L + G +YT ED TTR T AS A +
Sbjct: 247 SASVLERSYQSLFFLQRSSSDQLSSSKTLPLGQLGLLYTAETEDTTTTRLTFAS*QAFNS 68
Query: 469 *RVP 458
VP
Sbjct: 67 FSVP 56
Score = 41.4 bits (84), Expect(2) = 1e-011
Identities = 29/83 (34%), Positives = 36/83 (43%)
Frame = -2 / -2
Query: 979 SLHLVGTGYSGKSLARTRQRSPRCRVLSAQM*RPCAWGASYTRTCASATSLTCTYACAAF 800
S +G GY G + RS M*RP A SY + ASATS T T F
Sbjct: 577 SAKFLG*GYVGYKVFSMLIRSEALIGEELHM*RPDASAFSYAKRIASATSRTSTRFLYLF 398
Query: 799 T*VVADPVRYFITWSVLAFTVGC 731
+ V P++ +L FTV C
Sbjct: 397 STVSCSPLK*LRRTLLLVFTVDC 329
>gb|CN818757.1|CN818757 HRO4468_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C07_E14, mRNA sequence
Length = 805
Score = 84.5 bits (178), Expect(2) = 6e-026
Identities = 35/84 (41%), Positives = 47/84 (55%)
Frame = +3 / +3
Query: 432 EMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKN 611
E M++PA++GT V+ A VK+++ SSI P K D++CWSD E CK
Sbjct: 12 ERMLDPAVKGTMNVLKACSATEVKKLILVSSIAASCFTLDWPPDKIKDESCWSDKELCKE 191
Query: 612 TQNWYCYAKTVAEQGAWEVARKRG 683
+NWY AKT AE+ A E K G
Sbjct: 192 NENWYSLAKTTAEEMALEYGLKNG 263
Score = 48.7 bits (100), Expect(2) = 6e-026
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +3 / +3
Query: 744 NASTDHVMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDL 923
N +++ ++ L G T N V VRDVAEA + +Y + RYIC+ + DL
Sbjct: 327 NTTSNVLIYILKGGPDTMNNKFYPMVDVRDVAEALLLLYNKAGSSERYICSLDQMDLKDL 506
Query: 924 CRVLAKLFPEYPVPTKCKD 980
+L ++P Y K D
Sbjct: 507 LGILKNMYPNYRCTDKMVD 563
Score = 35.9 bits (72), Expect = 0.017
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = -2 / -1
Query: 649 SATVLA*QYQFWVFLQYSRSLQQVSSTGLLGSR*GFMYTVPMEDVNTTRFTPASSAAAIT 470
SA VLA +YQF L S S QQ+SS L G + +++ + FT + A T
Sbjct: 229 SAVVLAREYQFSFSLHNSLSDQQLSSLILSGGQSSVKQLAAIDETRMSFFTSVAEQALST 50
Query: 469 *RVP 458
VP
Sbjct: 49 FMVP 38
>gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C12_F24, mRNA sequence
Length = 735
Score = 78.0 bits (164), Expect(2) = 3e-016
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = +3 / +1
Query: 762 VMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDLCRVLAK 941
++KYL + Y+N + +V+V+DVA AHV E P A GRY A+ LH ++ +++ +
Sbjct: 115 MIKYLISGSPVYLNFSVGWVNVKDVALAHVLACEVPSASGRYCMADRVLHLSEVVKIIHE 294
Query: 942 LFPEYPVPTKCKD 980
++P PVP KC D
Sbjct: 295 MYPSLPVPEKCAD 333
Score = 40.5 bits (82), Expect = 7e-004
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = -2 / -2
Query: 919 SPRCRVLSAQM*RPCAWGASYTRTCASATSLTCTYACAAFT*VVADPVRYFI 764
S + R LSA P A G S+ RTCA ATS T T * +RY I
Sbjct: 272 SDKWRTLSAMQYLPLAEGTSHARTCARATSFTFTQPTLKLR*TGEPLIRYLI 117
Score = 22.6 bits (43), Expect(2) = 3e-016
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2 / +1
Query: 989 PSGGRIQVHQPEAQGSGDGLRAGLQCLYETVTSLQEKGML 1108
P QV + + + G L L ET+ SL+EKG +
Sbjct: 340 PFAPTYQVSRDKIKSLGIELTPFEATLRETIESLKEKGFV 459
>gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A06_B11, mRNA sequence
Length = 741
Score = 79.9 bits (168), Expect = 1e-015
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3 / +2
Query: 906 LHRGDLCRVLAKLFPEYPVPTKCKDQVNPPVVGYKFTNQRLKDLGMDFVP 1055
LHR D+ R+L+KLFPEYPVPT+C D+ N YK +NQ+L+DLG++F P
Sbjct: 590 LHREDVVRILSKLFPEYPVPTRCSDEANSRKQPYKMSNQKLQDLGLEFRP 739
Score = 56.5 bits (117), Expect = 1e-008
Identities = 30/52 (57%), Positives = 35/52 (67%)
Frame = -1 / -3
Query: 1055 RHEVHPQILEPLVGELVSYHRRVNLVLALGGYGVLREELGEDAAEVAAVQGA 900
R E+ P++LE LV LV RV LV A GG GVL EELGEDA +V AV+ A
Sbjct: 739 RPELEPEVLELLVRHLVWLLPRVCLVRAPGGDGVLGEELGEDADDVLAVEDA 584
Score = 55.6 bits (115), Expect = 2e-008
Identities = 32/73 (43%), Positives = 35/73 (47%)
Frame = -2 / -1
Query: 1057 TGTKSIPRSLSLWLVNLYPTTGGLTWSLHLVGTGYSGKSLARTRQRSPRCRVLSAQM*RP 878
TG S PRS S W LY S HLVGTGYSGKSL R R S R R + P
Sbjct: 741 TGLNSSPRSWSFWFDILYGCFLEFASSEHLVGTGYSGKSLERMRTTSSRWRTPRTTLSCP 562
Query: 877 CAWGASYTRTCAS 839
+ TR+ S
Sbjct: 561 LPTPSRGTRSVCS 523
>gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G05_M10, mRNA
sequence
Length = 632
Score = 68.4 bits (143), Expect = 3e-012
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +3 / +2
Query: 744 NASTDHVMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDL 923
N S+ ++ Y G T N + V VRDVA+A + YE A GRYIC+ S + DL
Sbjct: 98 NTSSKVLLSYFKGEHETVENKYRNLVDVRDVADAILLAYENAEASGRYICSSSPIKASDL 277
Query: 924 CRVLAKLFPEYPVP 965
+L L+P YP P
Sbjct: 278 ISILKTLYPTYPYP 319
Score = 41.4 bits (84), Expect = 4e-004
Identities = 29/83 (34%), Positives = 36/83 (43%)
Frame = -2 / -3
Query: 979 SLHLVGTGYSGKSLARTRQRSPRCRVLSAQM*RPCAWGASYTRTCASATSLTCTYACAAF 800
S +G GY G + RS M*RP A SY + ASATS T T F
Sbjct: 333 SAKFLG*GYVGYKVFSMLIRSEALIGEELHM*RPDASAFSYAKRIASATSRTSTRFLYLF 154
Query: 799 T*VVADPVRYFITWSVLAFTVGC 731
+ V P++ +L FTV C
Sbjct: 153 STVSCSPLK*LRRTLLLVFTVDC 85
>gb|CN819688.1|CN819688 HRO4403_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_A04_B07, mRNA
sequence
Length = 504
Score = 54.2 bits (112), Expect(2) = 3e-009
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3 / +1
Query: 837 AEAHVRVYEAPHAHGRYICAESTLHRGDLCRVLAKLFPEYPVPTKCKD 980
A AHV E P A GRY A+ LH ++ +++ +++P PVP KC D
Sbjct: 4 ALAHVLACEVPSASGRYCMADRVLHFSEVVKIIHEMYPSLPVPEKCAD 147
Score = 29.9 bits (59), Expect = 1.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2 / -2
Query: 919 SPRCRVLSAQM*RPCAWGASYTRTCASA 836
S + R LSA P A G S+ RTCA A
Sbjct: 86 SEKWRTLSAMQYLPLAEGTSHARTCARA 3
Score = 22.6 bits (43), Expect(2) = 3e-009
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2 / +1
Query: 989 PSGGRIQVHQPEAQGSGDGLRAGLQCLYETVTSLQEKGML 1108
P QV + + + G L L ET+ SL+EKG +
Sbjct: 154 PFAPTYQVSRDKIKSLGIELTPFETTLRETIESLKEKGFV 273
>gb|CN820509.1|CN820509 HRO4413_B11_C21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_B11_C21, mRNA
sequence
Length = 566
Score = 37.7 bits (76), Expect = 0.005
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3 / +3
Query: 873 AHGRYICAESTLHRGDLCRVLAKLFPEYPVP 965
A GR++C E H D +A+L+P+Y VP
Sbjct: 15 ASGRHLCVEPICHWSDFAAKVAELYPDYKVP 107
>gb|CN815073.1|CN815073 HRO4505_E10_I19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_E10_I19, mRNA sequence
Length = 513
Score = 30.4 bits (60), Expect = 0.75
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3 / +3
Query: 840 EAHVRVYEAPHAHGRYICAESTLHRGDLCRVLAKLFPEY 956
EA V E + GRYIC + R+LA +P+Y
Sbjct: 9 EAEVFFAENEPSSGRYICCSHNTTVPQIARLLAGKYPQY 125
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 29.9 bits (59), Expect = 1.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3 / -1
Query: 600 TRGRSSRCRPQACWGHGRGS 541
+RG RCRP GHGR S
Sbjct: 1055 SRGSRMRCRPSCS*GHGRSS 996
>gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E10_I20, mRNA sequence
Length = 836
Score = 26.7 bits (52), Expect(2) = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / -1
Query: 1393 PKRYIACMCGTCQESMHADACT 1328
P+R AC C +S ++ACT
Sbjct: 578 PRRRAACGCSARDQSRSSEACT 513
Score = 23.1 bits (44), Expect(2) = 1.5
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3 / -1
Query: 615 GCSCNTRGRSSRCRPQACWG 556
G C GRS R R WG
Sbjct: 473 GTRCRPSGRSHRSRRTPGWG 414
>gb|AI978362.1|AI978362 CDO251.F Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO251, mRNA sequence
Length = 451
Score = 29.0 bits (57), Expect = 2.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / -1
Query: 227 APPGEGLHSPRHGQEPCGSK 286
A PG+ H PRH + C SK
Sbjct: 337 AQPGQATHPPRHSSKFCTSK 278
>gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B10_C20, mRNA
sequence
Length = 726
Score = 25.4 bits (49), Expect(2) = 2.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3 / +2
Query: 594 GRSSRCRPQAC 562
GR++RCRP+ C
Sbjct: 20 GRTARCRPRGC 52
Score = 23.5 bits (45), Expect(2) = 2.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -2 / +2
Query: 259 PRTV*PFSRRRLTSQEAMNPPAPVTQTVRPCP 164
PR * F R+ + PPAP P P
Sbjct: 461 PRCP*TFGRKPAPAALPQRPPAPWRARTGPAP 556
>gb|CN818598.1|CN818598 HRO4467_B06_C11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_B06_C11, mRNA sequence
Length = 757
Score = 28.6 bits (56), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1 / -3
Query: 434 LRVIGDRGGGVEDAVTAGEGLGKALWVQQV 345
L +GD GGG D GEGL ++ V V
Sbjct: 104 LAPLGDGGGGCADGRVRGEGLQPSIHVDLV 15
>gb|CN818932.1|CN818932 HRO4473_A03_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A03_XXX, mRNA sequence
Length = 611
Score = 28.6 bits (56), Expect = 2.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2 / +2
Query: 1328 GACICMHAFLTSATHACNVSLWTIYI 1405
G C+C+H +A H+ N W + +
Sbjct: 341 GLCVCIHGNRMAANHSPNRDSWMVQV 418
>gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativa cDNA clone JMT4_G11 5', mRNA
sequence
Length = 396
Score = 28.1 bits (55), Expect = 3.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2 / -2
Query: 865 ASYTRTCASATSLTCTYACA 806
A+Y RTC S T TC CA
Sbjct: 194 ATYCRTCISLT*PTCCICCA 135
>gb|CN815130.1|CN815130 HRO4506_B12_C24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B12_C24, mRNA sequence
Length = 587
Score = 27.6 bits (54), Expect = 5.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1 / -3
Query: 347 VGAEEDETVDGAVKGPQVVVLWIHRVPDRAADC 249
V ++++ D A GP +++W H P DC
Sbjct: 186 VALAKEDSADSASSGPPNLLVWNHHSPLSL*DC 88
>gb|CN820107.1|CN820107 HRO4411_B09_D17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_B09_D17, mRNA
sequence
Length = 413
Score = 27.6 bits (54), Expect = 5.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1 / +3
Query: 1382 HCMHVWHLSGKHAC 1341
HC+ +WH SG + C
Sbjct: 294 HCISLWHPSGSYIC 335
>gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence containing transposon and
repetitive DNA linked to receptor kinase gene
Length = 3930
Score = 27.6 bits (54), Expect = 5.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2 / -1
Query: 1334 CICMHAFLTSATHACNVSLWTIYIQY 1411
C C+ A T +C+ ++WT+Y+ +
Sbjct: 3720 CRCVVATREKTTVSCSWNMWTVYLTH 3643
>gb|AY038013.1| Avena sativa isolate Pc68LrkC5 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 2396
Score = 27.6 bits (54), Expect = 5.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2 / +2
Query: 1334 CICMHAFLTSATHACNVSLWTIYIQY 1411
C C+ A T +C+ ++WT+Y+ +
Sbjct: 209 CRCVVATREKTTVSCSWNMWTVYLTH 286
>gb|CN815345.1|CN815345 HRO4508_F07_L14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F07_L14, mRNA sequence
Length = 394
Score = 27.2 bits (53), Expect = 7.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2 / -2
Query: 977 GPG*PSGGRIQVHQPEAQGSGDG 1045
G G P GG H +AQG G G
Sbjct: 174 GAGQPQGGEQAEHGRDAQGDGQG 106
>gb|CN820342.1|CN820342 HRO4418_C07_E14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C07_E14, mRNA
sequence
Length = 720
Score = 27.2 bits (53), Expect = 7.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2 / +3
Query: 967 VGTGYSGKSLARTRQRSPRCRVLSAQM*RPCAWGASYTRTCA 842
V T YSG+ A + SP R S++M P + + Y CA
Sbjct: 111 VATRYSGR*RAVVQ*LSPCVRTCSSEMRAPVS*ASLYVCVCA 236
>gb|CN820389.1|CN820389 HRO4418_G09_M18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G09_M18, mRNA
sequence
Length = 677
Score = 27.2 bits (53), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 244 PFSRRRLTSQEAMNPPAPVTQT 179
PFS R T Q +++PPA +T +
Sbjct: 42 PFSLPRATKQASVSPPASLTMS 107
>gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks old, post-germination Avena
sativa cDNA clone ASCID1-1_037_g11, mRNA sequence
Length = 748
Score = 24.9 bits (48), Expect(2) = 7.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -3
Query: 949 GKSLARTRQRSPRCRVLSA 893
G+ LAR R+R RCR A
Sbjct: 512 GRRLARPRRRRRRCRATRA 456
Score = 22.1 bits (42), Expect(2) = 7.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1 / -1
Query: 416 RGGGVEDAVTAGEGLGKALWVQQVGAEEDETV 321
R V TAG G V++VGA+E E V
Sbjct: 220 RSDRVGVTATAGGISGAVEVVEEVGADEVEVV 125
>gb|CN817014.1|CN817014 HRO4527_C10_F19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_C10_F19, mRNA sequence
Length = 764
Score = 26.7 bits (52), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3 / +1
Query: 1152 DLPSWSWSCFVGST 1111
D P W WS F+G T
Sbjct: 85 DTPGWWWSVFLGKT 126
>gb|CN817791.1|CN817791 HRO4461_A11_B21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_A11_B21, mRNA sequence
Length = 455
Score = 26.7 bits (52), Expect = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / -1
Query: 1393 PKRYIACMCGTCQESMHADACT 1328
P+R AC C +S ++ACT
Sbjct: 140 PRRRAACGCSARDQSRSSEACT 75
>gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRKY3 (wrky3) mRNA, complete cds
Length = 1206
Score = 26.7 bits (52), Expect = 9.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1 / +1
Query: 988 TLRW*DTSSPTRGSRIWGWTSCRS 1059
T RW P RG W +SC S
Sbjct: 79 TSRWPSRRRPRRGCAAWSTSSCSS 150
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,692,659
Number of Sequences: 8143
Number of extensions: 149599
Number of successful extensions: 896
Number of sequences better than 10.0: 31
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 532066036
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)