TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Aven... 68 1e-028
>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
sequence
Length = 644
Score = 67.5 bits (141), Expect(3) = 1e-028
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +2 / -1
Query: 758 AFVFMIKNGGIDTEADYPFTGHDGTCDLKLKNTRVVSIDSFERVPINYERALQKAVAHQP 937
A ++ KNGGI TEADYP+ G G CD VS+ S V N E+ L +AVA QP
Sbjct: 584 AIFWIWKNGGITTEADYPYMGKKGVCDKTKLEHHTVSVLSVGYVSSNNEQKLMEAVAKQP 405
Query: 938 VSASIEAS 961
V+A IE +
Sbjct: 404 VTAVIEVA 381
Score = 51.5 bits (106), Expect(3) = 1e-028
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +2 / -1
Query: 1043 GYGSEGGKDYWIVKNSWGTQWGEAGYVRMARNVRVRPPSAGIAMEPLY 1186
G + GK YWIVKNS GT +G GY+ R V GIA P+Y
Sbjct: 296 GTDASTGKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVY 153
Score = 41.4 bits (84), Expect(3) = 1e-028
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2 / -1
Query: 968 AFQLYSSGIFDGRCGTYLDHGVTVVGYGSE 1057
+F Y SG++ G CG +H VT+VGYG++
Sbjct: 377 SFAKYKSGVYSGPCGYAYNHIVTIVGYGTD 288
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,400,162
Number of Sequences: 8143
Number of extensions: 162726
Number of successful extensions: 1363
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 649769132
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)