TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 85 1e-032
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 84.9 bits (179), Expect(2) = 1e-032
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y+++HG GNW +V NTGL RC KSCRLRW N+LRP +++G FTP
Sbjct: 431 YVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTP 565
Score = 68.9 bits (144), Expect(2) = 1e-032
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ L S +GN+WA +A+ LP RTDN+IKNYWNT +K+
Sbjct: 569 EERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,695,510
Number of Sequences: 8143
Number of extensions: 26362
Number of successful extensions: 1761
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 114727032
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)