TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 7297169.2.1
         (545 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815908.1|CN815908  HRO4511_G10_N19ZS5 Lib AA071E1X Aven...    73   3e-034

>gb|CN815908.1|CN815908 HRO4511_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_G10_N19, mRNA sequence
          Length = 718

 Score = 73.1 bits (154), Expect(3) = 3e-034
 Identities = 32/58 (55%), Positives = 39/58 (67%)
 Frame = +1 / +3

                                                                     
Query: 55  YVQTDPSPTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAA 228
           Y+ +   P A I    T+ GK   AP+VA FSSRGP+ R P +LKPD+ APGVNILAA
Sbjct: 33  YIGSQRLPIAKIEPARTITGKQVPAPKVAFFSSRGPSIRYPTVLKPDIAAPGVNILAA 206




 Score = 66.2 bits (139), Expect(3) = 3e-034
 Identities = 27/49 (55%), Positives = 34/49 (69%)
 Frame = +1 / +3

                                                            
Query: 280 EFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSG 426
           E+   SG SMS PHV+G+ ALL+  HP WS AA+KSA++TTA   D  G
Sbjct: 216 EYAFNSGNSMSTPHVAGVVALLKAVHPHWSHAALKSAIVTTASTKDEYG 362




 Score = 38.0 bits (77), Expect(3) = 3e-034
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1 / +3

                                 
Query: 466 PFVRGAGHVDPNAALDPRLVYD 531
           PF  G G+++PNAA DP LVYD
Sbjct: 405 PFDYGGGNINPNAAADPGLVYD 470



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.316    0.132    0.393 


Matrix: BLOSUM62
Number of Hits to DB: 4,058,687
Number of Sequences: 8143
Number of extensions: 42130
Number of successful extensions: 1094
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 170341859
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)