TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 6293482.2.1
         (2042 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...    72   6e-040

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score = 71.6 bits (150), Expect(4) = 6e-040
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = -2 / +1

                                                               
Query: 505 VDLKPNEFQFLAFGSGRRMCPGVHSASATIEAMLSNLMYRFDWQLPAGMKAE 350
           V+     F+F  FGSGRR+CPG+  A++TIE  L+NL+Y FDW+LP G + +
Sbjct: 385 VNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGERVD 540




 Score = 61.1 bits (127), Expect(4) = 6e-040
 Identities = 27/66 (40%), Positives = 42/66 (63%)
 Frame = -2 / +1

                                                                       
Query: 892 DMFEAGTDTSYMTLEFAMTELIRKPHLMKKLQEEVRRNVPAGQEMVTEDNLPGMTDLKAV 713
           D+F A T+T+   LE+ M+ELI  P +M K+Q+EVR  +   Q ++T  +L  +  ++ V
Sbjct: 10  DLFGAATETTSTALEWTMSELINNPEVMAKVQKEVREVLGKDQVVITNSDLGELHYMRMV 189

                 
Query: 712 IKETLR 695
           IKE LR
Sbjct: 190 IKEVLR 207




 Score = 53.3 bits (110), Expect(4) = 6e-040
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2 / +1

                                                       
Query: 646 CEVAGYTIPANTRVVVNAWALGRHSGYWERENEFVPERFLSGDV 515
           CE+ GY IP  T + +NA+A+     +W+   EF PERF + +V
Sbjct: 256 CEIMGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERFENNNV 387




 Score = 30.4 bits (60), Expect(4) = 6e-040
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = -2 / +1

                                 
Query: 352 EDVDMTEVFGITVSRKEKLLLV 287
           E VDM E FGITV RK  L LV
Sbjct: 529 ERVDMLEKFGITVRRKFDLQLV 594



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15,669,436
Number of Sequences: 8143
Number of extensions: 203068
Number of successful extensions: 1731
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 762668020
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)