TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815040.1|CN815040 HRO4505_B12_C23ZS5 Lib AA071E1X Aven... 141 9e-035
>gb|CN815040.1|CN815040 HRO4505_B12_C23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B12_C23, mRNA sequence
Length = 774
Score = 141 bits (303), Expect = 9e-035
Identities = 56/117 (47%), Positives = 72/117 (61%)
Frame = +2 / +2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+E LLG++YF HA G +Y +N+S RMF +EDVTIGSWMLAMNVNH
Sbjct: 86 YESSCGLLGNEYFTHASGALYALSSEVVGTLATAKNDSLRMFDHEDVTIGSWMLAMNVNH 265
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSESE 352
E+ A+C+ CT +SIAVWD CSG C+P K+ LH C+ PT+ +V E E
Sbjct: 266 EDNRAMCDSTCTPTSIAVWDSKPCSGSCNPIEKIKGLHNTTLCSKSPTLPPDVEEEE 436
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,417,812
Number of Sequences: 8143
Number of extensions: 128769
Number of successful extensions: 1383
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 219361099
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)