TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866391.2.1
(613 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 99 1e-028
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 99.1 bits (210), Expect(2) = 1e-028
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +2 / +1
Query: 242 IINNGTEIVTEDELHSLSYLKAVVKETLRLHMPAPLLVPHLSMADCTIQGYTIPSGTRTI 421
++ ++T +L L Y++ V+KE LRLH P PLL+P + DC I GY IP GT
Sbjct: 121 VLGKDQVVITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIY 300
Query: 422 VNSWALARDPSCWERAEEFMPERF 493
+N++A++ DP W+ EF PERF
Sbjct: 301 INAFAISHDPVFWDNPTEFNPERF 372
Score = 41.8 bits (85), Expect(2) = 1e-028
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2 / +1
Query: 533 GNDFQYIPFGAGRRMCPAISFATA 604
G F++ PFG+GRR+CP I FAT+
Sbjct: 397 GTHFKFTPFGSGRRICPGIFFATS 468
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,725,840
Number of Sequences: 8143
Number of extensions: 124902
Number of successful extensions: 2293
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 197302441
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)