TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3858636.2.1
(907 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 210 3e-055
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 210 bits (453), Expect = 3e-055
Identities = 84/108 (77%), Positives = 97/108 (89%)
Frame = +2 / +1
Query: 299 EKDASASVFSKINRFEEELREALPREMEAARVAFETGAAPIANRIKESRSYPLYRFIRQD 478
E + A+VFSKI +FEEELR ALPRE+EAARVAFETG API N IKESRS+PLYRF+R++
Sbjct: 7 EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186
Query: 479 LGAVYLTGEKLKSPGEECNKVFLALSEGKLIDPMLDCLKEWDGKPLPI 622
LG VYLTGEKL SPGEECNKVFL +S+GKLIDPML+CLKEW+G+PLPI
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPI 330
Score = 137 bits (293), Expect = 3e-033
Identities = 69/115 (60%), Positives = 69/115 (60%)
Frame = -2 / -1
Query: 642 HRWRPQQMGRGLPSHSLRQSSMGSMSLPSLRARNTLLHSSPGDLSFSPVRYTAPRSWRMK 463
HR MGRG P HSLR SSMGSMSLP L RNTLLHSSPGD SFSPVRYT P S R K
Sbjct: 350 HRAL*TLMGRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTK 171
Query: 462 RYSGYDRLSLILLAIGAAPVSKATXXXXXXXXXXXXXXXXXXXXLENTDALASFS 298
RYSG D LSLI IGA PVSKAT LENT A S S
Sbjct: 170 RYSGKDLLSLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6
Score = 122 bits (260), Expect = 1e-028
Identities = 61/106 (57%), Positives = 67/106 (63%)
Frame = -1 / -3
Query: 640 PVASSADGQGLAVPLLEAVEHGVDELALAEGQEHXXXXXXXXXXXXXGQVHGAEVLADEA 461
P A DGQGLAVPLLEA++HGVDELALA+ QEH G+VH A++LADEA
Sbjct: 348 PRALDVDGQGLAVPLLEALQHGVDELALADAQEHLVALLAGGQEFLAGEVHAAQLLADEA 169
Query: 460 VQRVRPALLDPVGDRRXXXXXXXXXXXXXXGQRLAQLLLEPVDLGE 323
VQR RPALLD V DRR GQR AQLLLE DLGE
Sbjct: 168 VQRERPALLDQVRDRRGAGLEGDAGGLDLPGQRRAQLLLELGDLGE 31
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,300,475
Number of Sequences: 8143
Number of extensions: 97141
Number of successful extensions: 850
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 314073204
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)