TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 63 6e-024
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 63.4 bits (132), Expect(2) = 6e-024
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +3 / +1
Query: 213 YLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWGAVWQYKS 341
YLA+ IEYE DGDL ++K++ + +WAPM+ SWG++W+ S
Sbjct: 1 YLAVLIEYEDMDGDLTQVDMKEANSRSWAPMRESWGSIWRMDS 129
Score = 62.0 bits (129), Expect(2) = 6e-024
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3 / +1
Query: 354 LQAPLSVRLTSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
LQAP S+R+TS SG+ LVA+N+IPA W+P YRS V F
Sbjct: 139 LQAPFSMRITSDSGKQLVANNIIPANWRPNTDYRSFVQF 255
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,447,532
Number of Sequences: 8143
Number of extensions: 97281
Number of successful extensions: 1362
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 231615909
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)