TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Aven... 58 7e-022
>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
sequence
Length = 644
Score = 58.3 bits (121), Expect(3) = 7e-022
Identities = 24/53 (45%), Positives = 28/53 (52%)
Frame = -2 / -1
Query: 470 VTAVGYGSESGKDYWIVKNSWSASWGEAGYIRMRRNVPRPTGKCGIAMDASYP 312
+ G + +GK YWIVKNS S+G GYI R V G CGIA YP
Sbjct: 308 IVGYGTDASTGKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVYP 150
Score = 46.0 bits (94), Expect(3) = 7e-022
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2 / -1
Query: 725 NGGIDTEADYPFIGTDGTCDASKEKNEKVATI 630
NGGI TEADYP++G G CD +K ++ V+ +
Sbjct: 563 NGGITTEADYPYMGKKGVCDKTKLEHHTVSVL 468
Score = 32.7 bits (65), Expect(3) = 7e-022
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2 / -1
Query: 614 VASNNETALQEAVAIQPVSVAID 546
V+SNNE L EAVA QPV+ I+
Sbjct: 455 VSSNNEQKLMEAVAKQPVTAVIE 387
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,713,938
Number of Sequences: 8143
Number of extensions: 124171
Number of successful extensions: 928
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 532066036
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)