TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 94 4e-030
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 94.1 bits (199), Expect(2) = 4e-030
Identities = 38/51 (74%), Positives = 46/51 (90%)
Frame = -2 / +1
Query: 971 IENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
IEN SRQVTF KRRNGLLKKAYELS+LCDAE AL++FS RGRL+E++++S
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSSS 153
Score = 56.5 bits (117), Expect(2) = 4e-030
Identities = 21/68 (30%), Positives = 46/68 (67%)
Frame = -2 / +1
Query: 683 ANTRNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDNM 504
++ RNI+G+ + + +++L Q+E +++ ++ IR+RKN++L ++ ++ +E +LQ N
Sbjct: 283 SSQRNILGEDLGPLSMKELDQIESQIDVSLKHIRSRKNQVLLDQLFDLKSKEQELQDQNK 462
Query: 503 YLRSKIAE 480
LR K+ E
Sbjct: 463 DLRKKLQE 486
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,755,651
Number of Sequences: 8143
Number of extensions: 169956
Number of successful extensions: 1508
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 447402150
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)