TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748516.2.1
         (1155 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820496.1|CN820496  HRO4413_A07_A13ZS5 Lib AA069E1X Aven...   145   1e-035

>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
           sequence
          Length = 642

 Score =  145 bits (311), Expect = 1e-035
 Identities = 55/85 (64%), Positives = 70/85 (82%)
 Frame = -3 / +1

                                                                       
Query: 496 YLAVLIEHENKDGDVVQADIMQSNSGHWEPMHESWGSIWRIDPNRPLRGPFSMRITNESG 317
           YLAVLIE+E+ DGD+ Q D+ ++NS  W PM ESWGSIWR+D N  L+ PFSMRIT++SG
Sbjct: 1   YLAVLIEYEDMDGDLTQVDMKEANSRSWAPMRESWGSIWRMDSNHRLQAPFSMRITSDSG 180

                                    
Query: 316 RQLVAKNVIPANYIPDVDYRSFVQY 242
           +QLVA N+IPAN+ P+ DYRSFVQ+
Sbjct: 181 KQLVANNIIPANWRPNTDYRSFVQF 255




 Score =  110 bits (234), Expect = 6e-025
 Identities = 52/83 (62%), Positives = 59/83 (71%)
 Frame = +3 / -2

                                                                       
Query: 246 WTKER*STSGM*LAGMTFLATSCLPDSLVMRMEKGPRSGRLGSILQMEPQDSCMGSQWPE 425
           WTKER*S  G+ LAGM  LATSCLP+SLVMRME G     L SILQM+PQDS +G+   E
Sbjct: 251 WTKER*SVLGLQLAGMMLLATSCLPESLVMRMENGAWRRWLESILQMDPQDSRIGAHDRE 72

                                  
Query: 426 LLCMMSACTTSPSLFSCSMSTAR 494
           L   MS C  SPS+ S S+STAR
Sbjct: 71  LASFMSTCVRSPSMSSYSISTAR 3



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 10,801,549
Number of Sequences: 8143
Number of extensions: 155924
Number of successful extensions: 1595
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 411126300
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)