TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748501.2.2
         (993 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814680.1|CN814680  HRO4501_D01_G01ZS5 Lib AA071E1X Aven...   121   3e-029
gb|CN820687.1|CN820687  HRO4416_D03_H06ZS5 Lib AA069E1X Aven...   121   2e-028

>gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4501_D01_G01, mRNA sequence
          Length = 565

 Score =  121 bits (258), Expect(2) = 3e-029
 Identities = 42/78 (53%), Positives = 59/78 (75%)
 Frame = +2 / +3

                                                                       
Query: 347 KLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLY 526
           K+SS+F+GT++KC  C KTVYP+E++T+    YHKSCFKCSHGGC ++ S+Y A  G L+
Sbjct: 114 KVSSSFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCSHGGCTISPSNYIAHEGKLF 293

                             
Query: 527 CKIHFAQLFMEKGSYSHM 580
           C+ H  QL  EKG++S +
Sbjct: 294 CRHHHTQLIKEKGNFSQL 347




 Score = 22.6 bits (43), Expect(2) = 3e-029
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2 / +3

                          
Query: 251 FEQLFKETGSFSKNF 295
           F+QL K TGS  K F
Sbjct: 12  FDQLSKRTGSLDKIF 56



>gb|CN820687.1|CN820687 HRO4416_D03_H06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_D03_H06, mRNA
           sequence
          Length = 516

 Score =  121 bits (258), Expect = 2e-028
 Identities = 42/78 (53%), Positives = 59/78 (75%)
 Frame = +2 / +2

                                                                       
Query: 347 KLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLY 526
           K+SS+F+GT++KC  C KTVYP+E++T+    YHKSCFKCSHGGC ++ S+Y A  G L+
Sbjct: 11  KVSSSFAGTREKCFGCSKTVYPIERVTVNNTMYHKSCFKCSHGGCTISPSNYIAHEGKLF 190

                             
Query: 527 CKIHFAQLFMEKGSYSHM 580
           C+ H  QL  EKG++S +
Sbjct: 191 CRHHHTQLIKEKGNFSQL 244



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 10,490,598
Number of Sequences: 8143
Number of extensions: 143120
Number of successful extensions: 1026
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 349376006
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)