TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 104 4e-040
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 104 bits (222), Expect(2) = 4e-040
Identities = 43/65 (66%), Positives = 56/65 (86%)
Frame = -1 / +1
Query: 1173 IENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDSRMDKILERY 994
IENKI+RQVTF+KRRNGLLKKA+E+S+LCDAE A+I+FS +G+L+E++S S M K LERY
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSSSCMYKTLERY 180
Query: 993 ERYSY 979
+Y
Sbjct: 181 RTCNY 195
Score = 76.2 bits (160), Expect(2) = 4e-040
Identities = 32/81 (39%), Positives = 52/81 (64%)
Frame = -1 / +1
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
EY KLK ++E +Q ++++GEDL L+ K LKHIRSRK+ ++ + + +
Sbjct: 244 EYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIESQIDVSLKHIRSRKNQVLLDQLFD 423
Query: 744 LQKKERSLQEENKALQKELSE 682
L+ KE+ LQ++NK L+K+L E
Sbjct: 424 LKSKEQELQDQNKDLRKKLQE 486
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,909,059
Number of Sequences: 8143
Number of extensions: 130393
Number of successful extensions: 587
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 458284905
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)