TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA ... 134 2e-032
>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1510_WHE05H09, mRNA sequence
Length = 237
Score = 134 bits (287), Expect = 2e-032
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = +1 / +2
Query: 88 ERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKV 267
ER MAG+ +K+LGL VSPFVLRV +AL MKGVSYEY+E+DI +K ELLLK NPVHKKV
Sbjct: 2 ERARMAGEGDVKLLGLLVSPFVLRVRMALQMKGVSYEYIEQDILDKGELLLKYNPVHKKV 181
Query: 268 PVLIHNGKPICESLVIMQ 321
PVLIHNG P+CES +I+Q
Sbjct: 182 PVLIHNGVPLCESQIILQ 235
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,627,932
Number of Sequences: 8143
Number of extensions: 121193
Number of successful extensions: 810
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 354294135
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)