TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3671909.2.1
(767 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 73 3e-026
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 73.0 bits (153), Expect(3) = 3e-026
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = -1 / +1
Query: 584 VEFKGADFELLPFGAGRRMCPGMAFGLANVELALASLLFHFDWEAP 447
V + G F+ PFG+GRR+CPG+ F + +E+ALA+LL+HFDW+ P
Sbjct: 385 VNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLP 522
Score = 49.2 bits (101), Expect(3) = 3e-026
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = -1 / +1
Query: 752 LLLPRQSQEPRRVLGYDVPAGTTVLVNVWALGRDGRYW 639
LLLPR+++E ++GY++P GT + +N +A+ D +W
Sbjct: 226 LLLPRETREDCEIMGYNIPKGTNIYINAFAISHDPVFW 339
Score = 28.6 bits (56), Expect(3) = 3e-026
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1 / +1
Query: 437 DPAEFDMAEAFGITARRKAD 378
D DM E FGIT RRK D
Sbjct: 523 DGERVDMLEKFGITVRRKFD 582
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,993,337
Number of Sequences: 8143
Number of extensions: 84370
Number of successful extensions: 894
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 258075656
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)