TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665490.2.1
(1289 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 89 9e-053
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 89 7e-051
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 89.0 bits (188), Expect(6) = 9e-053
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = -1 / +1
Query: 470 PNAFDNKYYVDLLNREGLFTSDQDLLTNATTRPIVTRFAVDQDAFFHQFVYSYVKMGQVN 291
PNAFDN YY +LL+++GL SDQ L N TT V FA AF F + +KMG ++
Sbjct: 952 PNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNTVRNFASSASAFTGAFTTAMIKMGNIS 1131
Query: 290 VLTGSQGQVRANCSARN 240
LTG+QGQ+R +CS N
Sbjct: 1132 PLTGTQGQIRLSCSKVN 1182
Score = 58.8 bits (122), Expect(6) = 9e-053
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -1 / +1
Query: 1127 LSFDFYKKSCPKAESIVREFLASAVRQNVGLAAALIRLHFHDCFV 993
LS FY SCPKA + ++ +A+AV + + A+L+RLHFHDCFV
Sbjct: 76 LSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 53.8 bits (111), Expect(6) = 9e-053
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = -1 / +1
Query: 701 TSKVPTLLSFLAKINLDVTDLVALSGGHTVGIAHCSSFDNRLF 573
TS + L + +K NLD TD+VALSG HT+G A C +F +R++
Sbjct: 712 TSSLAQLQAAFSKKNLDTTDMVALSGAHTIGQAQCKNFRSRIY 840
Score = 40.5 bits (82), Expect(6) = 9e-053
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = -1 / +3
Query: 899 FKAVNDIRARLDQACGRVVSCADIVALAARESV 801
F +++I+ +++ C + VSC DI+A+AAR+SV
Sbjct: 411 FSVIDNIKTQVEAVCKQTVSCDDILAVAARDSV 509
Score = 28.1 bits (55), Expect(6) = 9e-053
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +1
Query: 791 GGPAYKLPLGRRD 753
GGP++ +PLGRRD
Sbjct: 631 GGPSWTVPLGRRD 669
Score = 24.0 bits (46), Expect(6) = 9e-053
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 995 VQGCDASILL 966
+QGCDAS+LL
Sbjct: 333 LQGCDASVLL 362
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 89.0 bits (188), Expect(6) = 7e-051
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = -1 / +1
Query: 470 PNAFDNKYYVDLLNREGLFTSDQDLLTNATTRPIVTRFAVDQDAFFHQFVYSYVKMGQVN 291
PNAFDN YY +LL+++GL SDQ L N TT V FA AF F + +KMG ++
Sbjct: 958 PNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNTVRNFASSASAFTGAFTTAMIKMGNIS 1137
Query: 290 VLTGSQGQVRANCSARN 240
LTG+QGQ+R +CS N
Sbjct: 1138 PLTGTQGQIRLSCSKVN 1188
Score = 58.8 bits (122), Expect(6) = 7e-051
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -1 / +1
Query: 1127 LSFDFYKKSCPKAESIVREFLASAVRQNVGLAAALIRLHFHDCFV 993
LS FY SCPKA + ++ +A+AV + + A+L+RLHFHDCFV
Sbjct: 76 LSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 50.6 bits (104), Expect(6) = 7e-051
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -1 / +1
Query: 701 TSKVPTLLSFLAKINLDVTDLVALSGGHTVGIAHCSSFDNRLF 573
TS + L + +K NLD T +VALSG HT+G A C +F +R++
Sbjct: 718 TSSLAQLQAAFSKKNLDTTGMVALSGAHTIGQAQCKNFRSRIY 846
Score = 43.2 bits (88), Expect(6) = 7e-051
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = -1 / +3
Query: 899 FKAVNDIRARLDQACGRVVSCADIVALAARESV 801
F +++I+ +++ C + VSCADI+A+AAR+SV
Sbjct: 411 FSVIDNIKTQVEAVCKQTVSCADILAVAARDSV 509
Score = 24.0 bits (46), Expect(6) = 7e-051
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +3
Query: 995 VQGCDASILL 966
+QGCDAS+LL
Sbjct: 333 LQGCDASVLL 362
Score = 22.1 bits (42), Expect(6) = 7e-051
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 797 LGGGPAYKLPLGRRD 753
LGG ++PLGRRD
Sbjct: 631 LGGPFLEQVPLGRRD 675
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,228,597
Number of Sequences: 8143
Number of extensions: 85825
Number of successful extensions: 640
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 465540075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)