TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3276111.2.1
         (1393 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820717.1|CN820717  HRO4416_G05_N10ZS5 Lib AA069E1X Aven...    88   3e-026

>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
            sequence
          Length = 644

 Score = 87.7 bits (185), Expect(4) = 3e-026
 Identities = 34/65 (52%), Positives = 43/65 (66%)
 Frame = +1 / -1

                                                                        
Query: 823  IEMGGSLQFYSGGVFSGQCGTRMNHAITVVGYGADSSSGLKYWLVKNSWGQSWGERGYLR 1002
            IE+  S   Y  GV+SG CG   NH +T+VGYG D+S+G KYW+VKNS G S+G  GY+ 
Sbjct: 392  IEVAVSFAKYKSGVYSGPCGYAYNHIVTIVGYGTDASTGKKYWIVKNSHGTSFGMGGYIL 213

                 
Query: 1003 MRRDV 1017
              R V
Sbjct: 212  FERGV 198




 Score = 33.1 bits (66), Expect(4) = 3e-026
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1 / -1

                          
Query: 643 WVIQNGGLTTEANYP 687
           W+ +NGG+TTEA+YP
Sbjct: 575 WIWKNGGITTEADYP 531




 Score = 29.0 bits (57), Expect(4) = 3e-026
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1 / -1

                                   
Query: 1027 GLCGIALDLAYPVV*FIYYHRMH 1095
            GLCGIA    YP +* I++ + H
Sbjct: 185  GLCGIASSPVYPTM*CIWHCKQH 117




 Score = 24.9 bits (48), Expect(4) = 3e-026
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1 / -3

                      
Query: 571 EQELIDCDPYD 603
           EQEL+DC  YD
Sbjct: 642 EQELVDCGQYD 610



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 10,260,366
Number of Sequences: 8143
Number of extensions: 120400
Number of successful extensions: 661
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 506652705
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)