TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204486.2.1
         (607 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817232.1|CN817232  HRO4464_D08_G16ZS5 Lib AA070E1X Aven...   107   1e-024
gb|CN818607.1|CN818607  HRO4467_B12_C23ZS5 Lib AA070E1X Aven...    80   3e-024

>gb|CN817232.1|CN817232 HRO4464_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4464_D08_G16, mRNA sequence
          Length = 782

 Score =  107 bits (229), Expect = 1e-024
 Identities = 41/90 (45%), Positives = 57/90 (63%)
 Frame = +3 / +3

                                                                       
Query: 36  DDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLS 215
           D ++P+S+ W +PQY +IG A+VFT VG  EFFYDQ PDA +S+  AL L+ + +G+++S
Sbjct: 153 DAVIPMSLWWIMPQYLLIGAADVFTMVGMQEFFYDQMPDAFKSLGLALYLSVLGVGSFIS 332

                                         
Query: 216 XXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
                       R G   W  +NLNRGHLD
Sbjct: 333 SFLISVIDGVTRRDGGTSWFADNLNRGHLD 422



>gb|CN818607.1|CN818607 HRO4467_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4467_B12_C23, mRNA sequence
          Length = 861

 Score = 80.3 bits (169), Expect(2) = 3e-024
 Identities = 31/59 (52%), Positives = 39/59 (66%)
 Frame = +3 / +3

                                                                      
Query: 129 FFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
           FFYD++PDAMRS+C A S+ + ++GNYLS            R G  GWIP+NLN GHLD
Sbjct: 555 FFYDESPDAMRSLCVAFSVASDSVGNYLSSFILYLVPVFTARGGSPGWIPDNLNEGHLD 731




 Score = 46.0 bits (94), Expect(2) = 3e-024
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +3 / +2

                                                
Query: 21  GLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEF 131
           GL      VP+SI WQ PQYF++G AEVF+ +G   F
Sbjct: 449 GLVHRKVAVPMSILWQGPQYFLLGIAEVFSNIGLTVF 559



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,205,154
Number of Sequences: 8143
Number of extensions: 80377
Number of successful extensions: 1625
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 194851479
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)