TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3147935.2.1
         (711 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821264.1|CN821264  HRO4423_D02_H03ZS5 Lib AA069E1X Aven...   141   1e-034
gb|CN815287.1|CN815287  HRO4508_A06_B12ZS5 Lib AA071E1X Aven...   137   2e-033
gb|CN815958.1|CN815958  HRO4515_D01_H01ZS5 Lib AA071E1X Aven...   114   2e-026

>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
           sequence
          Length = 733

 Score =  141 bits (303), Expect = 1e-034
 Identities = 47/96 (48%), Positives = 69/96 (71%)
 Frame = -3 / +1

                                                                       
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
           YH+W  + +    WK  +LP G + FY  T PLD  WHVLGLG++ SI R E+++A+V H
Sbjct: 271 YHKWQNMNEDRVLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVAH 450

                                               
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
           Y+G +KPWLE+++ KYR YW RY+ YD+P+++ CN+
Sbjct: 451 YNGNMKPWLELAMTKYRPYWTRYIKYDHPYIRGCNL 558



>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_A06_B12, mRNA sequence
          Length = 570

 Score =  137 bits (293), Expect = 2e-033
 Identities = 47/96 (48%), Positives = 68/96 (70%)
 Frame = -3 / +1

                                                                       
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
           YHRW  L ++   WK  +LP G + FY  T PLD  WHVLGLG++ ++   E++SA+VIH
Sbjct: 160 YHRWQTLNENRLLWKLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHSEIDSAAVIH 339

                                               
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
           Y+G +KPWLEI++ KYR YW +Y+NY++ ++  C I
Sbjct: 340 YNGNMKPWLEIAMTKYRPYWTKYINYEHSYVHGCKI 447



>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_D01_H01, mRNA sequence
          Length = 653

 Score =  114 bits (243), Expect = 2e-026
 Identities = 37/82 (45%), Positives = 60/82 (73%)
 Frame = -3 / +1

                                                                       
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
           WK  +LP G + FY+ T PLD  WHVLGLG++ SI  +E+ +A+V+H++G +KPWL+I +
Sbjct: 358 WKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGM 537

                                 
Query: 466 PKYRGYWNRYLNYDNPHLQQCN 401
            ++R  W +Y++Y +  ++QCN
Sbjct: 538 NQFRHLWTKYVDYGDSFIRQCN 603



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,946,825
Number of Sequences: 8143
Number of extensions: 83743
Number of successful extensions: 866
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 234946234
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)