TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3107376.2.2
         (1851 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...   103   9e-053

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score =  103 bits (220), Expect(4) = 9e-053
 Identities = 38/80 (47%), Positives = 51/80 (63%)
 Frame = -1 / +1

                                                                       
Query: 687 DGRMVMEEDLSRMPYLKATIKESMRIHPPAPFLLPHFSTHDCEINGYTIPAGTRVIVNAW 508
           D  ++   DL  + Y++  IKE +R+HPP P LLP  +  DCEI GY IP GT + +NA+
Sbjct: 133 DQVVITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIYINAF 312

                               
Query: 507 ALARDPTCWDKAEEFFPERF 448
           A++ DP  WD   EF PERF
Sbjct: 313 AISHDPVFWDNPTEFNPERF 372




 Score = 76.2 bits (160), Expect(4) = 9e-053
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = -1 / +1

                                                                
Query: 444 EQGRDAEVDMYGKDIRFVPFGAGRRICAGATFAIATVEIMLANLIYHFDWEMP 286
           E+  +  V+  G   +F PFG+GRRIC G  FA +T+EI LANL+YHFDW++P
Sbjct: 364 ERFENNNVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLP 522




 Score = 50.6 bits (104), Expect(4) = 9e-053
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = -1 / +1

                                                         
Query: 807 NMFEAAIETSFLVLEYSMSELMNNRHVLAKLQKEVRTATPDGRMVM 670
           ++F AA ET+   LE++MSEL+NN  V+AK+QKEVR      ++V+
Sbjct: 10  DLFGAATETTSTALEWTMSELINNPEVMAKVQKEVREVLGKDQVVI 147




 Score = 29.5 bits (58), Expect(4) = 9e-053
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1 / +1

                                  
Query: 267 GAKVDMSDQFGMTLRRTQKLYLV 199
           G +VDM ++FG+T+RR   L LV
Sbjct: 526 GERVDMLEKFGITVRRKFDLQLV 594



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15,157,832
Number of Sequences: 8143
Number of extensions: 198073
Number of successful extensions: 1350
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 685800692
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)