TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106097.2.2
         (1005 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816530.1|CN816530  HRO4521_G10_M19ZS5 Lib AA071E1X Aven...   111   2e-037

>gb|CN816530.1|CN816530 HRO4521_G10_M19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_G10_M19, mRNA sequence
          Length = 749

 Score =  111 bits (236), Expect(3) = 2e-037
 Identities = 44/85 (51%), Positives = 63/85 (74%)
 Frame = +3 / +1

                                                                       
Query: 216 QKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVL 395
           +++  ED E SS Y  +FK  N    PP+K++R+ MRIQ+LRC+ LY+H  ++L+V  + 
Sbjct: 493 RQMIFEDSEHSSAY*HAFKVDNPNHLPPLKDLRKLMRIQSLRCNALYNHSATRLSVTTIH 672

                                    
Query: 396 ASRSQALRYLYIRWGVELSNITVIV 470
           ASRSQA+RYL+IRWG+EL NI V+V
Sbjct: 673 ASRSQAIRYLFIRWGIELPNIVVLV 747




 Score = 51.5 bits (106), Expect(3) = 2e-037
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +3 / +1

                                                    
Query: 96  AELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
           +++  +I  ++ S IEYRWGGEGLRK L++WA    + +G+
Sbjct: 364 SKVTHVIHQNHQSHIEYRWGGEGLRKYLVKWATSVVERKGR 486




 Score = 26.7 bits (52), Expect(3) = 2e-037
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3 / +1

                                   
Query: 3   GIEASXFXAFICNXXXDLXXPSSS 74
           G+  + F AFICN    +  PS S
Sbjct: 274 GMHPAGFDAFICNSGSSIYYPSYS 345



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 11,007,559
Number of Sequences: 8143
Number of extensions: 159056
Number of successful extensions: 690
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 350666550
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)