TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071507.2.1
         (921 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815915.1|CN815915  HRO4511_H05_P09ZS5 Lib AA071E1X Aven...   107   5e-040

>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_H05_P09, mRNA sequence
          Length = 842

 Score =  107 bits (228), Expect(2) = 5e-040
 Identities = 50/90 (55%), Positives = 60/90 (66%)
 Frame = -1 / -3

                                                                       
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
           AVKFGKAFG+KVTV STS SKR EAI  LGAD F++S DE QM +   ++  I+DT S  
Sbjct: 735 AVKFGKAFGLKVTVFSTSESKRDEAISLLGADNFVLSSDEKQMGSLKNSLHFIVDTASGD 556

                                         
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPA 412
           HP  P LALLK  G M ++G P +    PA
Sbjct: 555 HPFDPYLALLKVGGVMALLGFPGEIRVHPA 466




 Score = 72.5 bits (152), Expect(2) = 5e-040
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = -1 / -3

                                                                       
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
           G + ++G+  G  +D Q M+ F   + I  ++E+IK+DY+N A+ERL   DVRYRFVID+
Sbjct: 453 GARSLSGSVTGGTKDTQEMMNFCAANKIYPDIELIKIDYINEALERLVNRDVRYRFVIDI 274



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,673,209
Number of Sequences: 8143
Number of extensions: 68674
Number of successful extensions: 691
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 320159894
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)