TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821316.1|CN821316 HRO4423_H11_P21ZS5 Lib AA069E1X Aven... 97 2e-021
>gb|CN821316.1|CN821316 HRO4423_H11_P21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_H11_P21, mRNA
sequence
Length = 372
Score = 97.3 bits (206), Expect = 2e-021
Identities = 40/61 (65%), Positives = 45/61 (73%)
Frame = -2 / +3
Query: 251 TNIINGGIECGHGTDPRVTDRIGFYKRYCDVFRIGYGSNLDCDGQRPFNSGLAVEVAAQ* 72
TNIINGG+ECG G D RV DRIGFY RYC + + G NLDC QRPFNS L+ +AAQ*
Sbjct: 6 TNIINGGLECGIGPDDRVADRIGFYLRYCAILGVDPGINLDCYNQRPFNSWLSAGLAAQ* 185
Query: 71 K 69
K
Sbjct: 186 K 188
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,317,748
Number of Sequences: 8143
Number of extensions: 72297
Number of successful extensions: 2008
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 180145707
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)