TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Aven... 120 4e-028
>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
sequence
Length = 657
Score = 120 bits (256), Expect = 4e-028
Identities = 46/68 (67%), Positives = 61/68 (89%)
Frame = -2 / +1
Query: 488 TSSVSLQSYSGQEDLYCVYVPTNHLYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMP 309
TS+V LQ+ G E+L VYVPTNHLYIGDIF++NS ++IRPNLS+REGIEI+VSGGM+MP
Sbjct: 19 TSNVVLQTDKGDEELCSVYVPTNHLYIGDIFLLNSDEIIRPNLSIREGIEIIVSGGMTMP 198
Query: 308 QILSTLDP 285
Q++++L+P
Sbjct: 199 QVIASLEP 222
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,254,456
Number of Sequences: 8143
Number of extensions: 170093
Number of successful extensions: 1083
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 321377232
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)