TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3042337.2.1
         (945 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...    93   9e-037

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score = 92.7 bits (196), Expect(3) = 9e-037
 Identities = 32/78 (41%), Positives = 47/78 (60%)
 Frame = -2 / +1

                                                                       
Query: 740 DLPRLGYLHCIVSETLRLYPVVPTLVPHESTADCTVGGHRVPSGTMLLVNVYAIHRDPAI 561
           DL  L Y+  ++ E LRL+P  P L+P E+  DC + G+ +P GT + +N +AI  DP  
Sbjct: 157 DLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIYINAFAISHDPVF 336

                             
Query: 560 WADPAAFRPERFEDGRAD 507
           W +P  F PERFE+   +
Sbjct: 337 WDNPTEFNPERFENNNVN 390




 Score = 62.0 bits (129), Expect(3) = 9e-037
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = -2 / +1

                                                                       
Query: 491 PFGMGRRKCPGEALALRTLGLVLGTLIQCFDWDTVGGAEVDMAEGGGITLPRAVPLEAIC 312
           PFG GRR CPG   A  T+ + L  L+  FDW    G  VDM E  GIT+ R   L+ + 
Sbjct: 418 PFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGERVDMLEKFGITVRRKFDLQLVA 597

                
Query: 311 KPRHA 297
            P  +
Sbjct: 598 IPHQS 612




 Score = 32.2 bits (64), Expect(3) = 9e-037
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2 / +1

                                                       
Query: 881 MFAGGSXXXXXXXEWAMSLLLSHPDVLEKAQAEIDASAGHSRLL 750
           +F   +       EW MS L+++P+V+ K Q E+    G  +++
Sbjct: 13  LFGAATETTSTALEWTMSELINNPEVMAKVQKEVREVLGKDQVV 144



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,709,466
Number of Sequences: 8143
Number of extensions: 120788
Number of successful extensions: 987
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 329898598
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)