TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 83 9e-021
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 83.1 bits (175), Expect(2) = 9e-021
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +3 / +3
Query: 342 VRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
V+RVVV SS+SAV NP WP G+V+DE W+D D C KN WY SKTLAE+ A+
Sbjct: 96 VKRVVVVSSVSAVYNNPNWPKGKVLDEDNWSDEDLCRKNKDWYDLSKTLAEREAF 260
Score = 30.9 bits (61), Expect(2) = 9e-021
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3 / +3
Query: 267 PQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTS 365
P +++ PAV GTLN ++A +A R VVV+S
Sbjct: 24 P*GRIIAPAVTGTLNELKACYEAKVKRVVVVSS 122
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,728,588
Number of Sequences: 8143
Number of extensions: 23592
Number of successful extensions: 801
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 156670248
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)