TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950290.2.2
         (867 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821309.1|CN821309  HRO4423_H04_P07ZS5 Lib AA069E1X Aven...    74   2e-037

>gb|CN821309.1|CN821309 HRO4423_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_H04_P07, mRNA
           sequence
          Length = 585

 Score = 73.9 bits (155), Expect(3) = 2e-037
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = -3 / +2

                                                
Query: 679 GPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
           G  QLFKALAVFALR INLTK+ESRPHK+RPLRV+DD
Sbjct: 2   GTRQLFKALAVFALRKINLTKMESRPHKKRPLRVADD 112




 Score = 69.3 bits (145), Expect(3) = 2e-037
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = -3 / +2

                                               
Query: 574 DDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKE 467
           D+CS+ LK+FDYLFYVD EASMADP  QNAL NLK+
Sbjct: 110 DNCSTPLKHFDYLFYVDFEASMADPNAQNALNNLKQ 217




 Score = 60.2 bits (125), Expect(3) = 2e-021
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = +3 / -1

                                             
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGP 680
           TRRGL LCGRLSI VRL+ L ANTASALKSC  P
Sbjct: 102 TRRGLFLCGRLSILVRLIFLRANTASALKSCLVP 1




 Score = 45.5 bits (93), Expect(3) = 2e-037
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -3 / +2

                                 
Query: 472 KEFATFLRVLGSYPTDVNEP*I 407
           +EFATFLRVLGSYPTDV+E *I
Sbjct: 215 QEFATFLRVLGSYPTDVSET*I 280




 Score = 40.0 bits (81), Expect(3) = 2e-021
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1 / -2

                                             
Query: 472 SDFQEHSESLDQPLMLQGQHKKGNQSSLRARNSH 573
           S + EH E LDQPL  Q  H++G++S+  A NS+
Sbjct: 212 SSYSEHFEHLDQPLTPQNLHRRGSRSASGAWNSY 111




 Score = 34.5 bits (69), Expect(3) = 2e-021
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +3 / -1

                             
Query: 417 SFTSVG*LPRTLKNVANS 470
           S TSVG*LPRTL+ VANS
Sbjct: 270 SLTSVG*LPRTLRKVANS 217



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,549,558
Number of Sequences: 8143
Number of extensions: 128684
Number of successful extensions: 727
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 298247810
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)