TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943966.2.1
(599 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 185 7e-048
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 185 bits (398), Expect = 7e-048
Identities = 73/121 (60%), Positives = 92/121 (76%)
Frame = -2 / +3
Query: 598 ERAGVAGKVDFREGPALGNLDELLADEANLGAFDFAFVDADKPNYFNYHEQLLRLVRVGG 419
E+AGVA K+DFREGPAL LD LL DEAN G FDF FVDADK NY NYH++L++LVRVGG
Sbjct: 24 EKAGVAHKIDFREGPALPVLDALLEDEANHGTFDFVFVDADKDNYLNYHQRLMKLVRVGG 203
Query: 418 TIVYDNTLWCGTVAMPPETPMSDIDRRFSAAIRDLNVRLSADERVEVCQLAIADGVTICR 239
+ YDNTLW G+V +P + PM R + + +LN L+AD+RVE+CQL + DG+T+CR
Sbjct: 204 LLGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNKALAADDRVEICQLPVGDGITLCR 383
Query: 238 R 236
R
Sbjct: 384 R 386
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,437,000
Number of Sequences: 8143
Number of extensions: 66991
Number of successful extensions: 1489
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 192400517
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)