TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 138 5e-034
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 138 bits (297), Expect = 5e-034
Identities = 51/112 (45%), Positives = 70/112 (62%)
Frame = +2 / +1
Query: 5 QENFRIHPPGTLLIPRETMRSCVIGGYDVLPGTRIFVNVWAMGRDPSIWDRPEEFSPERF 184
+E R+HPP LL+PRET C I GY++ GT I++N +A+ DP WD P EF+PERF
Sbjct: 193 KEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERF 372
Query: 185 EGSHVDFRGSSFELLPFGSGRRSCPAIAMGXXXXXXXXXXXXHCFDWQLPEG 340
E ++V++ G+ F+ PFGSGRR CP I + FDW+LP+G
Sbjct: 373 ENNNVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDG 528
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,903,919
Number of Sequences: 8143
Number of extensions: 113144
Number of successful extensions: 3482
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 167890897
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)