TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Aven... 99 7e-022
>gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A06_B11, mRNA sequence
Length = 741
Score = 98.7 bits (209), Expect = 7e-022
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = -1 / +2
Query: 548 VLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTP 396
VLHREDVVR L K FP YPVP RCSDE N RKQPYK+SNQ+L++LGLEF P
Sbjct: 587 VLHREDVVRILSKLFPEYPVPTRCSDEANSRKQPYKMSNQKLQDLGLEFRP 739
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,629,311
Number of Sequences: 8143
Number of extensions: 79791
Number of successful extensions: 1519
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 185047631
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)