TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 109 4e-025
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 109 4e-025
gb|CN819189.1|CN819189 HRO4451_B10_C19ZS5 Lib AA070E1X Aven... 106 3e-024
gb|CN820364.1|CN820364 HRO4418_E06_I12ZS5 Lib AA069E1X Aven... 106 3e-024
gb|CN820184.1|CN820184 HRO4412_B04_D08ZS5 Lib AA069E1X Aven... 95 9e-021
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 109 bits (233), Expect = 4e-025
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P RLGS G+
Sbjct: 2843 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPSNRLGSYEGSN 3022
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK HPFF G+NWAL+R TAPP+
Sbjct: 3023 EIKEHPFFRGINWALVRGTAPPK 3091
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 109 bits (233), Expect = 4e-025
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P RLGS G+
Sbjct: 2780 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPSNRLGSYEGSN 2959
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
EIK HPFF G+NWAL+R TAPP+
Sbjct: 2960 EIKEHPFFRGINWALVRGTAPPK 3028
>gb|CN819189.1|CN819189 HRO4451_B10_C19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B10_C19, mRNA sequence
Length = 791
Score = 106 bits (226), Expect = 3e-024
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 138 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSARIGSNTGAN 317
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 318 DIKEHPFFEDIYWPLIRCMSPPE 386
>gb|CN820364.1|CN820364 HRO4418_E06_I12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_E06_I12, mRNA
sequence
Length = 699
Score = 106 bits (226), Expect = 3e-024
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T N++ + L FP + VS A+ LI GLL ++P R+GS+ GA
Sbjct: 147 MLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLEAKQLIHGLLQRDPSARIGSNTGAN 326
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IK HPFFE + W LIR +PPE
Sbjct: 327 DIKEHPFFEDIYWPLIRCMSPPE 395
>gb|CN820184.1|CN820184 HRO4412_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B04_D08, mRNA
sequence
Length = 610
Score = 95.0 bits (201), Expect = 9e-021
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G + T +N++ + ++FP + +VS AR LI LL ++P RLGS G+
Sbjct: 284 MLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLPARQLIYRLLHRDPSNRLGSHEGSN 463
Query: 396 EIKRHPFFEGLNWALIRW 343
EIK HPFF G+NW W
Sbjct: 464 EIKEHPFFRGINWGSRAW 517
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,167,070
Number of Sequences: 8143
Number of extensions: 80111
Number of successful extensions: 1434
Number of sequences better than 1.0e-020: 6
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 183822150
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)