TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619325.2.1
(1403 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 74 2e-049
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 71 2e-049
gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Aven... 83 8e-029
gb|CN815456.1|CN815456 HRO4509_H04_O07ZS5 Lib AA071E1X Aven... 119 9e-028
gb|CN816318.1|CN816318 HRO4519_D05_H09ZS5 Lib AA071E1X Aven... 115 2e-026
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 73.9 bits (155), Expect(5) = 2e-049
Identities = 32/86 (37%), Positives = 52/86 (60%)
Frame = +2 / +1
Query: 557 SNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSFGSDRLDGPS 736
++A+ + L PTS+L+ L ++F+ K + D+V LSGAHT+G++ C +F S G +
Sbjct: 673 TSATGNTGDLPAPTSSLAQLQAAFSKKNLDTTDMVALSGAHTIGQAQCKNFRSRIYGGDT 852
Query: 737 DINPALAAFLRTRCPANTTTSDDPTV 814
+IN A A L+ CP T S D ++
Sbjct: 853 NINAAFATSLQANCPQATGGSGDSSL 930
Score = 70.7 bits (148), Expect(5) = 2e-049
Identities = 33/90 (36%), Positives = 44/90 (48%)
Frame = +2 / +1
Query: 794 TSDDPTVMQDVVTPNAMDNQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWWED 973
+ D D TPNA DN YY N+LS L SD L + T V + A +
Sbjct: 913 SGDSSLAPLDTKTPNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNTVRNFASSASAFTG 1092
Query: 974 KFEKAMVKMASLEVKTGHQGQVRKNCRAIN 1063
F AM+KM ++ TG QGQ+R +C +N
Sbjct: 1093 AFTTAMIKMGNISPLTGTQGQIRLSCSKVN 1182
Score = 61.1 bits (127), Expect(5) = 2e-049
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +2 / +3
Query: 356 EKLAAPNNPSLRGFELIDAIKDALEAACPGVVSCADIIAFAARDA 490
E+ AAPN SLRGF +ID IK +EA C VSC DI+A AARD+
Sbjct: 372 EQNAAPNAGSLRGFSVIDNIKTQVEAVCKQTVSCDDILAVAARDS 506
Score = 46.9 bits (96), Expect(5) = 2e-049
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +2 / +1
Query: 179 YYRYTCPQAEAIVKASMEKAIAQNPGNGAAVIRMLFHDCFV 301
+Y +CP+A A +K+ + A++ + GA+++R+ FHDCFV
Sbjct: 88 FYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 23.5 bits (45), Expect(5) = 2e-049
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 299 VEGCDASVLLDPTPFSPTP 355
++GCDASVLL + P
Sbjct: 333 LQGCDASVLLSGNEQNAAP 389
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 70.7 bits (148), Expect(5) = 2e-049
Identities = 33/90 (36%), Positives = 44/90 (48%)
Frame = +2 / +1
Query: 794 TSDDPTVMQDVVTPNAMDNQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWWED 973
+ D D TPNA DN YY N+LS L SD L + T V + A +
Sbjct: 919 SGDSSLAPLDTKTPNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNTVRNFASSASAFTG 1098
Query: 974 KFEKAMVKMASLEVKTGHQGQVRKNCRAIN 1063
F AM+KM ++ TG QGQ+R +C +N
Sbjct: 1099 AFTTAMIKMGNISPLTGTQGQIRLSCSKVN 1188
Score = 70.7 bits (148), Expect(5) = 2e-049
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = +2 / +1
Query: 557 SNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSFGSDRLDGPS 736
++A+ + L PTS+L+ L ++F+ K + +V LSGAHT+G++ C +F S G +
Sbjct: 679 TSATGNTGDLPAPTSSLAQLQAAFSKKNLDTTGMVALSGAHTIGQAQCKNFRSRIYGGDT 858
Query: 737 DINPALAAFLRTRCPANTTTSDDPTV 814
+IN A A L+ CP T S D ++
Sbjct: 859 NINAAFATSLQANCPQATGGSGDSSL 936
Score = 63.8 bits (133), Expect(5) = 2e-049
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +2 / +3
Query: 356 EKLAAPNNPSLRGFELIDAIKDALEAACPGVVSCADIIAFAARDA 490
E+ AAPN SLRGF +ID IK +EA C VSCADI+A AARD+
Sbjct: 372 EQNAAPNAGSLRGFSVIDNIKTQVEAVCKQTVSCADILAVAARDS 506
Score = 46.9 bits (96), Expect(5) = 2e-049
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +2 / +1
Query: 179 YYRYTCPQAEAIVKASMEKAIAQNPGNGAAVIRMLFHDCFV 301
+Y +CP+A A +K+ + A++ + GA+++R+ FHDCFV
Sbjct: 88 FYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 23.5 bits (45), Expect(5) = 2e-049
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 299 VEGCDASVLLDPTPFSPTP 355
++GCDASVLL + P
Sbjct: 333 LQGCDASVLLSGNEQNAAP 389
>gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A06_B11, mRNA sequence
Length = 737
Score = 83.1 bits (175), Expect(2) = 8e-029
Identities = 39/115 (33%), Positives = 53/115 (46%)
Frame = +2 / +3
Query: 719 RLDGPSDINPALAAFLRTRCPANTTTSDDPTVMQDVVTPNAMDNQYYKNVLSHTVLFTSD 898
R+ ++I+ A A L+ CP T + D D +TPNA DN YY N+ S L SD
Sbjct: 177 RIYNDTNIDAAFATSLQANCPQTTGSGDSSLAPLDTMTPNAFDNAYYTNLQSQKGLLHSD 356
Query: 899 AALLTSPETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 1063
L V A + F AMV M ++ KTG QG++R C +N
Sbjct: 357 QELFNGGSADSTVSSFASSASTFSSAFATAMVNMGNIAPKTGTQGEIRLTCSKVN 521
Score = 59.7 bits (124), Expect(2) = 8e-029
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +2 / +3
Query: 548 GTFSNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSF 709
GT ++ S + L PT +L +L +F+ KG+SL D++ LSGAHT+G+S C F
Sbjct: 9 GTTASKSNAESNLPAPTFSLQNLTDNFSNKGLSLTDMIALSGAHTIGQSQCRFF 170
>gb|CN815456.1|CN815456 HRO4509_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_H04_O07, mRNA sequence
Length = 555
Score = 119 bits (255), Expect = 9e-028
Identities = 47/92 (51%), Positives = 67/92 (72%)
Frame = +2 / +2
Query: 788 TTTSDDPTVMQDVVTPNAMDNQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWW 967
+++ +D TV+QD+ TP+ +DNQYYKNVL H VLF SDA LLT+ +T+ V +K W
Sbjct: 74 SSSGNDNTVVQDIKTPDKLDNQYYKNVLRHEVLFASDATLLTATDTSDTVSAFSKNAKQW 253
Query: 968 EDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 1063
EDKF AMVKM ++E+KT G++R++CR +N
Sbjct: 254 EDKFMAAMVKMGAIEIKTSANGEIRRDCRVLN 349
>gb|CN816318.1|CN816318 HRO4519_D05_H09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D05_H09, mRNA sequence
Length = 493
Score = 115 bits (245), Expect = 2e-026
Identities = 47/84 (55%), Positives = 62/84 (73%)
Frame = +2 / +1
Query: 797 SDDPTVMQDVVTPNAMDNQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWWEDK 976
++DPTV+QD+VTP+ +D +YY N+L H VLF SDAALLTS T + VL+N IP WE K
Sbjct: 19 TNDPTVVQDIVTPDRLDTRYYSNLLRHNVLFKSDAALLTSRRTTRKVLENVFIPRRWERK 198
Query: 977 FEKAMVKMASLEVKTGHQGQVRKN 1048
F +AMVKMA++E+KT G +N
Sbjct: 199 FARAMVKMAAIEIKTAANGGEIRN 270
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,708,309
Number of Sequences: 8143
Number of extensions: 180496
Number of successful extensions: 1315
Number of sequences better than 1.0e-020: 5
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 511489485
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)