TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2618988.2.1
         (631 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820825.1|CN820825  HRO4420_C10_F20ZS5 Lib AA069E1X Aven...   107   2e-024
>gb|CN820825.1|CN820825 HRO4420_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4420_C10_F20, mRNA
           sequence
          Length = 621

 Score =  107 bits (228), Expect = 2e-024
 Identities = 40/88 (45%), Positives = 58/88 (65%)
 Frame = -3 / +3

                                                                       
Query: 575 DRGLVVRSWAPQRDVLAHASVGGFVTHCGWNSVLEAVMAGVPMVAWPLYAEQRLNRVFLE 396
           DRG ++R WAPQ  +L H ++GGFVTHCGWNS LE+V AGVPMV WP +A+Q  N   + 
Sbjct: 42  DRGFIIRGWAPQMLILNHRALGGFVTHCGWNSTLESVSAGVPMVTWPRFADQFQNEKLIV 221

                                       
Query: 395 KEMQLAVAVEGYDSDEGIVAAEEVAAKV 312
           + +++ V++   D   GI   + +  +V
Sbjct: 222 EVLKVGVSIGAKDYGSGIENHDVIRGEV 305
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,803,209
Number of Sequences: 8143
Number of extensions: 80182
Number of successful extensions: 1423
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 204655327
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)