TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2618988.2.1
(631 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820825.1|CN820825 HRO4420_C10_F20ZS5 Lib AA069E1X Aven... 107 2e-024
>gb|CN820825.1|CN820825 HRO4420_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_C10_F20, mRNA
sequence
Length = 621
Score = 107 bits (228), Expect = 2e-024
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = -3 / +3
Query: 575 DRGLVVRSWAPQRDVLAHASVGGFVTHCGWNSVLEAVMAGVPMVAWPLYAEQRLNRVFLE 396
DRG ++R WAPQ +L H ++GGFVTHCGWNS LE+V AGVPMV WP +A+Q N +
Sbjct: 42 DRGFIIRGWAPQMLILNHRALGGFVTHCGWNSTLESVSAGVPMVTWPRFADQFQNEKLIV 221
Query: 395 KEMQLAVAVEGYDSDEGIVAAEEVAAKV 312
+ +++ V++ D GI + + +V
Sbjct: 222 EVLKVGVSIGAKDYGSGIENHDVIRGEV 305
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,803,209
Number of Sequences: 8143
Number of extensions: 80182
Number of successful extensions: 1423
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 204655327
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)